TkA03G451150 | RubberDandelionOmics

Gene overview

TkA03G451150

Reference: TK1151 Chr: Chr03 Coordinates: 112579694-112581256 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1179 bp · TkA03G451150|TK1151|cDNA

TATGCATCTATTCTCCACCGATAAAACAAAGAGAAGCCTGTGTACGGCCATCAGATTCCCTCAGCCGACCACCTCCAAGATAAGATTAAAGATTATCCGCATTAATTCTAAAGAGATTGTCATCATTTTAGTAGATTCTGGTTTTGGATTTGTTAGGTCGGATCGATTGATTACTTGATTTTTTGTTGAGTGGAAGGATGATGTCGGAATCACAGTCAGGATGCGGGATGAACGGTGGCGATGATGGCTCCGGTGAGATC...

CDS

Download CDS FASTA

822 bp · TkA03G451150|TK1151|CDS

ATGATGTCGGAATCACAGTCAGGATGCGGGATGAACGGTGGCGATGATGGCTCCGGTGAGATCATGTTGTTCGGAGTCAGAGTGAAGGTTGATCCGATGAGGAAGAGTGTGAGTATGAACGATCTGTCACAGTATGTACAGGTACAACCTGCTACTCATGATTCGTCTAACAATAGTGCTAACCTTGATGGCTCCACCGCGATTGCTGCCGATAACGGTTACGCCTCCGCTGATGATGCTGTCCGCAACCAATCCAATGG...

Protein

Download Protein FASTA

273 aa · TkA03G451150|TK1151|PROTEIN

MMSESQSGCGMNGGDDGSGEIMLFGVRVKVDPMRKSVSMNDLSQYVQVQPATHDSSNNSANLDGSTAIAADNGYASADDAVRNQSNGGRERKRGIPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTESVAAIPVEEQKNHENNNIQPAQEISPLSGFPLMAAFPTTVGPHPSPLPIEDQMEIKSTMTNVNFNQKDENNSLSLSLNLSLFMITTEWILPPSSSSPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G451150`
TK1151 ID	TkA03G451150
OH-1004 ID	LXL04_009609
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 75.824 / OH-1004 76.384 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G451150

Location Chr03:112579694-112581256 (+)

Description Similar to Transcription factor MYB1R1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47390`	Transcriptional repressor.	A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation.2013 · DOI: 10.1093/jxb/ert223 Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.2014 · DOI: 10.1038/ncomms4767 A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.2015 · DOI: 10.1007/s11103-015-0321-2
`At5g61620`	Probable transcription factor involved in somatic embryogenesis.	Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.2016 · DOI: 10.1016/j.jplph.2016.02.012

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0561400`	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters.	Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression.2002 · DOI: 10.1105/tpc.001735 A novel MYBS3-dependent pathway confers cold tolerance in rice.2010 · DOI: 10.1104/pp.110.153015
`UniProt: B8A9B2`	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009609 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009751 response to salicylic acid Biological Process

KEGG gene cross-reference

ath:AT5G08520

ath:AT5G47390

ath:AT5G61620

sot:102577613

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · TkA03G451150 · TK1151

Cytoplasm0.094

Rank 2 · TkA03G451150 · TK1151

Cell membrane0.029

Rank 3 · TkA03G451150 · TK1151

Endoplasmic reticulum0.018

Rank 4 · TkA03G451150 · TK1151

Plastid0.012

Rank 5 · TkA03G451150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding96-141 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G451150	`PF00249`	Myb_DNA-binding	96	141	2.3e-11	44.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LVS0`	Arabidopsis thaliana	sp\|Q9LVS0\|KUA1_ARATH Transcription factor KUA1	55.000%	Swiss-Prot	Medium
`Q9FKF9`	Arabidopsis thaliana	sp\|Q9FKF9\|M5162_ARATH Probable transcription factor At5g61620	42.600%	Swiss-Prot	Medium
`Q7XC57`	Oryza sativa subsp. japonica	sp\|Q7XC57\|MYBS3_ORYSJ Transcription factor MYBS3	55.700%	Swiss-Prot	Medium
`B8A9B2`	Oryza sativa subsp. indica	sp\|B8A9B2\|MYBS1_ORYSI Transcription factor MYBS1	68.700%	Swiss-Prot	Low

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