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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G450830
Reference: TK1151 Chr: Chr03 Coordinates: 112512785-112516095 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3063 bp · TkA03G450830|TK1151|cDNA

GTTTAACTTACGAGCCTGAAACTTGGAGGTTGATTAGGCACTTCACCCAAATCTTTTAAGCGGCAAATAAAACCTGTTATCCACAACGAAGCCACTGTCTTCTTCTCCTTCTTCCTCTTCCTGTTCCACCCTGCTGCAGCTCAAACTCCATTGTTGCACCTCTGGCCCTCTCTTAAGTACACAGAGATACTCGGTAAGCAAAGTCAAGTTTCAATTTTTGAGAGTAAACTCTATCGTCAACTCATGCGAACTAAAACCCT...

CDS

Download CDS FASTA

2628 bp · TkA03G450830|TK1151|CDS

ATGACACTTTCATACCACTCCATCTCCCCAATTCTCATCCGCAGTGCAAACAAAACCACCATACAAGATTACAGTTCCCCCCAATTTACCACCCGAGGGTTCAAATTCGCCGTGCGCCGGTCAATCGTACTTTGCGAGAGCTCTCTAGCTAAACCACCCGCCTCCAGATCCAGAACCAGATCCAAACCCAAACCAAAAGAGCTGGTATTCGGCTACCCATCAAACAGCGTCGAAAAAGGCAAGTACAGCTATGAAGTTGA...

Protein

Download Protein FASTA

875 aa · TkA03G450830|TK1151|PROTEIN

MTLSYHSISPILIRSANKTTIQDYSSPQFTTRGFKFAVRRSIVLCESSLAKPPASRSRTRSKPKPKELVFGYPSNSVEKGKYSYEVESLLNKLSGLPPRGSIARCLEPFKNKLSLNDFALVFKELAQRGDWQRSLRLFKQMQRQVWSKPNDHIYTIVIGILGREGLLDKCYEVFEEMPSEGVPRTVFSYTSIINAYGRNGQYETSLQLLDRMKKERISPNILTYNTVINSCARGGYDWEGLLSLFAEMRHEGLQPDLVTY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G450830
TK1151 IDTkA03G450830
OH-1004 IDLXL04_009607
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G450830
LocationChr03:112512785-112516095 (+)
DescriptionSimilar to PTAC2: Pentatricopeptide repeat-containing protein At1g74850, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74850 Involved in plastid gene expression.
pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression.2006 · DOI: 10.1105/tpc.105.036392

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009607 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010019 chloroplast-nucleus signaling pathway Biological Process
GO:0031930 mitochondria-nucleus signaling pathway Biological Process
GO:0042793 plastid transcription Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74850
ath:AT2G18940
ath:AT2G31400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.699
Rank 1 · TkA03G450830 · TK1151
Mitochondrion0.173
Rank 2 · TkA03G450830 · TK1151
Nucleus0.073
Rank 3 · TkA03G450830 · TK1151
Cytoplasm0.022
Rank 4 · TkA03G450830 · TK1151
Cell membrane0.012
Rank 5 · TkA03G450830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_24104-185 aa
PF13762MNE1111-145 aa
PF13812PPR_3112-162 aa
PF24760TPR_IF140_C118-142 aa
PF17177PPR_long122-226 aa
PF13041PPR_2123-143 aa
PF13428TPR_14124-145 aa
PF01535PPR125-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G450830PF23276TPR_241041851e-35123.3
TkA03G450830PF13762MNE11111450.003218.2
TkA03G450830PF13812PPR_31121621.1e-65218.3
TkA03G450830PF24760TPR_IF140_C1181420.0004221.4
TkA03G450830PF17177PPR_long1222261e-33117.2
TkA03G450830PF13041PPR_21231431.8e-93307.2
TkA03G450830PF13428TPR_141241451.2e-0938.6
TkA03G450830PF01535PPR1251431.3e-80260.9
TkA03G450830PF13424TPR_121261400.2512.3
TkA03G450830PF12854PPR_11271428.4e-60198.9
TkA03G450830PF29070MSC6_N1272092.6e-32113.1
TkA03G450830PF13176TPR_71271400.007617.0
TkA03G450830PF08579RPM21471610.0001423.0
TkA03G450830PF12854PPR_11481778.4e-60198.9
TkA03G450830PF13041PPR_21491951.8e-93307.2
TkA03G450830PF01535PPR1531821.3e-80260.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7Q2Arabidopsis thalianasp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic84.700%Swiss-ProtHigh

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