TkA03G450610 | RubberDandelionOmics

Gene overview

TkA03G450610

Reference: TK1151 Chr: Chr03 Coordinates: 112457739-112460244 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2114 bp · TkA03G450610|TK1151|cDNA

ATTCTCTGCAGAAAAGTAAAAGGGTGACTTTCACTCGTTACATATACAATCGGAGGAAACCCCAAAGCAATTTCCAAGCATCCCCCATATATATACTCGTCTCTTAGATCTCATCTGCTCAATAAAATCATTCAAAAACCCAACACAATCAGGGGTCGACACCCAGAACACAGTTTCATATCCCCATAAACACACACTAATGAAGAACAATCTTCCATTGCTGTGTGTATTGCTGCTTTCGGTTCTGAGTCTCAACTCAA...

CDS

Download CDS FASTA

1341 bp · TkA03G450610|TK1151|CDS

ATGTACCATGCTCATTACGGGATGCAACGAGAGGCAGGATTATACGGATCGATCCGGGTGGCGCTGCCGGCCGGAGAAGTCGAGCCGTTCTCCTACGACTATGACAGAAGCATCATTCTCAACGACTGGTATCATAAAAGCACATACGAACAGGCCGCCGGCCTTTCGGCTGTTCCCTTCGTCTGGGTCGGCGATCCTCAGTCACTGTTGATTCAAGGAAGAGGAACATTCAATTGCAGTGCACCGGGAATTGAGGCCGG...

Protein

Download Protein FASTA

446 aa · TkA03G450610|TK1151|PROTEIN

MYHAHYGMQREAGLYGSIRVALPAGEVEPFSYDYDRSIILNDWYHKSTYEQAAGLSAVPFVWVGDPQSLLIQGRGTFNCSAPGIEAGKCNATNPECSPYVLTVVPGKTYRLRIGSLTALAALSFEIEGHNMTVVEADGHYVQPFTVKNLFIYSGETYSVLITANQDPSRNYWAVSKMVVRNNTVPNGLAIFNYYPNHPLRSPPTVPPSGPLWNAMEPRVNQSLAIKSHPNYIHPVPKTSDRVLILLNTQNQINGSIKWST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G450610`
TK1151 ID	TkA03G450610
OH-1004 ID	LXL04_038821
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	49.700
Protein coverage (%)	TK1151 99.327 / OH-1004 76.370 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G450610`
Location	Chr03:112457739-112460244 (-)
Description	Similar to AAO: L-ascorbate oxidase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038821` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006952 defense response Biological Process GO:0009615 response to virus Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0019854 L-ascorbic acid catabolic process Biological Process GO:0042542 response to hydrogen peroxide Biological Process GO:0050687 negative regulation of defense response to virus Biological Process GO:0005576 extracellular region Cellular Component GO:0009506 plasmodesma Cellular Component GO:0005507 copper ion binding Molecular Function GO:0008447 L-ascorbate oxidase activity Molecular Function GO:0016491 oxidoreductase activity Molecular Function
KEGG gene cross-reference	csv:101215231 nta:107826841 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.528

Rank 1 · TkA03G450610 · TK1151

Cell membrane0.296

Rank 2 · TkA03G450610 · TK1151

Cytoplasm0.106

Rank 3 · TkA03G450610 · TK1151

Endoplasmic reticulum0.065

Rank 4 · TkA03G450610 · TK1151

Golgi apparatus0.062

Rank 5 · TkA03G450610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00394Cu-oxidase37-194 aa

PF07731Cu-oxidase_298-140 aa

PF00394Cu-oxidase292-356 aa

PF07731Cu-oxidase_2302-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G450610	`PF00394`	Cu-oxidase	37	194	1.1e-43	149.8
TkA03G450610	`PF07731`	Cu-oxidase_2	98	140	2.5e-40	138.1
TkA03G450610	`PF00394`	Cu-oxidase	292	356	1.1e-43	149.8
TkA03G450610	`PF07731`	Cu-oxidase_2	302	423	2.5e-40	138.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card