TkA03G449470 | RubberDandelionOmics

Gene overview

TkA03G449470

Reference: TK1151 Chr: Chr03 Coordinates: 112107094-112108733 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

729 bp · TkA03G449470|TK1151|cDNA

ATGATGATGGCTGCTTTTGTTGCTCTTGTGGAGTCCACGGGCGGCTTCATGGTAGTTTCGAGGTATGCAAGTGCAACTCCCTTGCCACCGTCTATTCTAAGCCGTGGCGTTGGTTGGCAGGGAATTGGCATATTGTTGTCGGGCTTATTTGGAACCGTAAGTGGATCTTCGGTATCTTTTGAGAATGCTGGTCTTTTGGCTTTGACCCGTGCTGGTAGTCGTAGAGTCGTGCAGATTTCCGCTGGCTTCATGATCTTCTT...

CDS

Download CDS FASTA

729 bp · TkA03G449470|TK1151|CDS

ATGATGATGGCTGCTTTTGTTGCTCTTGTGGAGTCCACGGGCGGCTTCATGGTAGTTTCGAGGTATGCAAGTGCAACTCCCTTGCCACCGTCTATTCTAAGCCGTGGCGTTGGTTGGCAGGGAATTGGCATATTGTTGTCGGGCTTATTTGGAACCGTAAGTGGATCTTCGGTATCTTTTGAGAATGCTGGTCTTTTGGCTTTGACCCGTGCTGGTAGTCGTAGAGTCGTGCAGATTTCCGCTGGCTTCATGATCTTCTT...

Protein

Download Protein FASTA

242 aa · TkA03G449470|TK1151|PROTEIN

MMMAAFVALVESTGGFMVVSRYASATPLPPSILSRGVGWQGIGILLSGLFGTVSGSSVSFENAGLLALTRAGSRRVVQISAGFMIFFSVLGKFGAVFASIPTPIVAALYCVFFAYVGAAGLSFLQFCNLNTFRTKFKLGFSVFLGLSIPQYFNEYEAINGYGPVHTFSRWFNNIVNVPFSSEAFVAVILAYTLDNTLHYKDGIVRKDRGKHWWDKFRSFNTDTRSEEFYSLSFKLNRYFPSM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G449470`
TK1151 ID	TkA03G449470
OH-1004 ID	LXL04_009571
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.500
Protein coverage (%)	TK1151 100.000 / OH-1004 45.065 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G449470

Location Chr03:112107094-112108733 (+)

Description Similar to NAT6: Nucleobase-ascorbate transporter 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62890`	Nucleobase-ascorbate transporter 6.	No verified direct reference in this release
`At5g49990`	Nucleobase-ascorbate transporter 5.	No verified direct reference in this release
`At1g60030`	Nucleobase-ascorbate transporter 7.	No verified direct reference in this release
`At1g10540`	Nucleobase-ascorbate transporter 8.	No verified direct reference in this release
`At1g49960`	Nucleobase-ascorbate transporter 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009571 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G10540

ath:AT1G49960

ath:AT1G60030

ath:AT5G49990

ath:AT5G62890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.731

Rank 1 · TkA03G449470 · TK1151

Cytoplasm0.103

Rank 2 · TkA03G449470 · TK1151

Lysosome / Vacuole0.102

Rank 3 · TkA03G449470 · TK1151

Endoplasmic reticulum0.079

Rank 4 · TkA03G449470 · TK1151

Mitochondrion0.033

Rank 5 · TkA03G449470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00860Xan_ur_permease1-152 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G449470	`PF00860`	Xan_ur_permease	1	152	3e-30	105.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q27GI3`	Arabidopsis thaliana	sp\|Q27GI3\|NAT6_ARATH Nucleobase-ascorbate transporter 6	82.200%	Swiss-Prot	High
`Q8RWE9`	Arabidopsis thaliana	sp\|Q8RWE9\|NAT5_ARATH Nucleobase-ascorbate transporter 5	77.300%	Swiss-Prot	High
`Q0WPE9`	Arabidopsis thaliana	sp\|Q0WPE9\|NAT7_ARATH Nucleobase-ascorbate transporter 7	74.800%	Swiss-Prot	High
`Q8VZQ5`	Arabidopsis thaliana	sp\|Q8VZQ5\|NAT8_ARATH Nucleobase-ascorbate transporter 8	70.100%	Swiss-Prot	High
`P93039`	Arabidopsis thaliana	sp\|P93039\|NAT4_ARATH Nucleobase-ascorbate transporter 4	64.700%	Swiss-Prot	High

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