TkA03G447270 | RubberDandelionOmics

Gene overview

TkA03G447270

Reference: TK1151 Chr: Chr03 Coordinates: 111589858-111592850 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1889 bp · TkA03G447270|TK1151|cDNA

CCATTTATAGTATCTTCAACAATCACCACCATTCGCCCACTTCCCCTTTTCTATTGATTTGTTAAATCCCAACGCCTTTGTCACCACCACTAATAAGTGCCTACTGGTCTCTTTGACGCTTTCCATCTCCAAGTAAATCTCACATACTTTTCAGCCAAAAACCAAAAAAAAAAGAAAAAAAAATCCCACCTAGCTCACTATATTCCGACCATTTTCTGAAAATCAAGATTTTCTTGAAGTTATAATCGACTCAAAATTGT...

CDS

Download CDS FASTA

1410 bp · TkA03G447270|TK1151|CDS

ATGTCTTTGAACATTCTATCTCCAACAGAAGTCAGAGCCATCTCTTTCTTGGACACCTCCAAATTCAACACCCATCTTCTCAAGCTTCAAGGTGGGTTCTCTTTTAAGAGGAATGCTAGTAAGTTAAAATGTGGAAAGGGGATCCAATGTGCGGCGGCGCCACCTCCTTCGGCATGGCCGGGAACGGCTGCTGTTACGCCGGGGTCTAAGAACTGGAATGGCCCTAAGCCTATTTCAATCATCGGATCCACTGGTTCCGT...

Protein

Download Protein FASTA

469 aa · TkA03G447270|TK1151|PROTEIN

MSLNILSPTEVRAISFLDTSKFNTHLLKLQGGFSFKRNASKLKCGKGIQCAAAPPPSAWPGTAAVTPGSKNWNGPKPISIIGSTGSVGTQTLDIVAEHPDKFKVVALAAGSNVTLLADQIKAFKPQLVSIKNESLVNELKEALAGADYMPEIIPGDQGVIEVARHPDCVTVVTGIMGCAGLKPTVAAIEAGKNIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGFPEGALRRIILTASGGAFRDWPVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G447270`
TK1151 ID	TkA03G447270
OH-1004 ID	LXL04_009548
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G447270

Location Chr03:111589858-111592850 (-)

Description Similar to DXR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62790`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0106900`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009548 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Biological Process

GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0030145 manganese ion binding Molecular Function

GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity Molecular Function

GO:0070402 NADPH binding Molecular Function

KEGG gene cross-reference

amr:AM1_0563

ath:AT5G62790

dosa:Os01g0106900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.887

Rank 1 · TkA03G447270 · TK1151

Mitochondrion0.180

Rank 2 · TkA03G447270 · TK1151

Cytoplasm0.031

Rank 3 · TkA03G447270 · TK1151

Nucleus0.015

Rank 4 · TkA03G447270 · TK1151

Peroxisome0.013

Rank 5 · TkA03G447270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368NmrA77-148 aa

PF02670DXP_reductoisom78-206 aa

PF01118Semialdhyde_dh78-141 aa

PF03447NAD_binding_385-220 aa

PF08436DXP_redisom_C220-303 aa

PF13288DXPR_C335-457 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G447270	`PF05368`	NmrA	77	148	0.18	12.1
TkA03G447270	`PF02670`	DXP_reductoisom	78	206	6.3e-48	163.4
TkA03G447270	`PF01118`	Semialdhyde_dh	78	141	0.0063	17.6
TkA03G447270	`PF03447`	NAD_binding_3	85	220	0.26	12.7
TkA03G447270	`PF08436`	DXP_redisom_C	220	303	2.1e-38	131.0
TkA03G447270	`PF13288`	DXPR_C	335	457	1.3e-37	129.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XFS9`	Arabidopsis thaliana	sp\|Q9XFS9\|DXR_ARATH 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic	80.900%	Swiss-Prot	High
`Q8W250`	Oryza sativa subsp. japonica	sp\|Q8W250\|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic	78.500%	Swiss-Prot	High

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