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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G443240
Reference: TK1151 Chr: Chr03 Coordinates: 110503532-110506832 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1319 bp · TkA03G443240|TK1151|cDNA

TTTCCCTTTCTATTTTTTCGAAGGACAAAGCGCTGCTAGGTTACGAGCTCACAGCAGAAGCAAACGACAATTCTCTCCCTCTCCAAACTCAAAATCCAGATAAAATCGCGTTCTTGGCTAAATTTCTGTGCCAACACCAATGACACCTCACCCTCAGATAGACGATGATGACGATTTTGATGGTGATTTTCCTGGAGCCGACAACACCAGGCGCGCAGGTTATGATCAGCTATCGGAGCACTAAGAGGAGCTTTGGAGAT...

CDS

Download CDS FASTA

936 bp · TkA03G443240|TK1151|CDS

ATGACACCTCACCCTCAGATAGACGATGATGACGATTTTGATGGTGATTTTCCTGGAGCCGACAACACCAGGCGCGCAGGCACTAAGAGGAGCTTTGGAGATCTTGATGATGAGGAAGATGATATTTTTGGCTCCAAAAAGGCTAACACAAAAACAGAAGAAACTGCACCAGGTGTAGCAACTGGGATGATTTTATCACTGCGTGAGAGTCTCCAGAGCTGTAAGGATAATCTTGCAACATGCCAATCAGAGCTTGAAGC...

Protein

Download Protein FASTA

311 aa · TkA03G443240|TK1151|PROTEIN

MTPHPQIDDDDDFDGDFPGADNTRRAGTKRSFGDLDDEEDDIFGSKKANTKTEETAPGVATGMILSLRESLQSCKDNLATCQSELEATKSEIQKWHSAFQNESVITTEPTNAVSYLQNLKSSEELLRDQLEKAKKKEAAFIVTIAKREQEISDLKSAVRDLRSQLKPPSMQGRRLLLDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVNFTPQSKMGKMLMAKCRTLQEENEEIGNQAKEGKIHELSMKLALHKSQNLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G443240
TK1151 IDTkA03G443240
OH-1004 IDLXL04_009510
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G443240
LocationChr03:110503532-110506832 (-)
DescriptionSimilar to FIP37: FKBP12-interacting protein of 37 kDa
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54170 Probable regulatory subunit of the N6-methyltransferase complex, a multiprotein complex that mediates N6-methyladenosine (m6A) methylation at the 5'-[AG]GAC-3' consensus sites of some mRNAs.
The immunophilin-interacting protein AtFIP37 from Arabidopsis is essential for plant development and is involved in trichome endoreduplication.2004 · DOI: 10.1104/pp.103.028050

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009510 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000375 RNA splicing, via transesterification reactions Biological Process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0001510 RNA methylation Biological Process
GO:0006397 mRNA processing Biological Process
GO:0007530 sex determination Biological Process
GO:0007539 primary sex determination, soma Biological Process
GO:0007548 sex differentiation Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009637 response to blue light Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0016556 mRNA modification Biological Process
GO:0019099 female germ-line sex determination Biological Process
KEGG gene cross-reference
ath:AT3G54170
dme:Dmel_CG6315
hsa:9589
mmu:60532
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.698
Rank 1 · TkA03G443240 · TK1151
Cytoplasm0.318
Rank 2 · TkA03G443240 · TK1151
Mitochondrion0.029
Rank 3 · TkA03G443240 · TK1151
Cell membrane0.028
Rank 4 · TkA03G443240 · TK1151
Golgi apparatus0.026
Rank 5 · TkA03G443240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04859DUF64161-102 aa
PF15905HMMR_N62-139 aa
PF17098Wtap63-90 aa
PF06103DUF94863-95 aa
PF08651DASH_Duo163-96 aa
PF27954CCDC19264-91 aa
PF10167BORCS864-127 aa
PF03961FapA64-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G443240PF04859DUF641611022.29.3
TkA03G443240PF15905HMMR_N621390.0002121.6
TkA03G443240PF17098Wtap63901e-55188.7
TkA03G443240PF06103DUF94863950.3211.9
TkA03G443240PF08651DASH_Duo163965.67.6
TkA03G443240PF27954CCDC19264911.6e-0628.6
TkA03G443240PF10167BORCS8641272.68.8
TkA03G443240PF03961FapA641563.37.9
TkA03G443240PF24161CCDC39653102.2e-0626.6
TkA03G443240PF07926TPR_MLP1_2651320.01616.0
TkA03G443240PF06818Fez1662080.03615.3
TkA03G443240PF26346Plectin_PPL662092.08.8
TkA03G443240PF29057SYN8_N661007.87.8
TkA03G443240PF23649FKBP15661658.86.6
TkA03G443240PF13870CCDC113_CCDC96_CC67932.7e-0627.9
TkA03G443240PF30842LEKR1671060.07514.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZSZ8Arabidopsis thalianasp|Q9ZSZ8|FIP37_ARATH FKBP12-interacting protein of 37 kDa71.900%Swiss-ProtHigh

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