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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G440030
Reference: TK1151 Chr: Chr03 Coordinates: 109599158-109603310 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3335 bp · TkA03G440030|TK1151|cDNA

AAAAAACTAGAAACCAACTCACTGCTCAGAGTTTTAGAGGAAAAAACTGACATGTTTGTAGAGAGAGAAAGCTCAACGAACGTGACTGCGATGGAGTGTATATCACCCTTCCTCATTAATGACATTTACATTTACTCCTTTGCCACCTCCCACCTCCATTACCACATTCTTCTTCGAAAGCTCACTCATCAATACTACTACAGATTACAGATATCTTTGTTCTAGGGTTAGGGTTTTTTTATGCTTAAAAGTCTTCGAGG...

CDS

Download CDS FASTA

2547 bp · TkA03G440030|TK1151|CDS

ATGGATGGTCGTCGACATTCAGTTGACATTCCTCTTTCAAAAGCCCTGATAGCTCTTCGAAGAGTGAGATCACTTAGAGACCCATCAACGAACTCATCAAGCCGATTGGCTACTTTTGTCGACAATTTAAATTGGGAAACCGATTCCACCAATGGGATCGTTCTCGAACAAGTAAACAATCATCGCCTAAGTGACCCCACCACTTACGATTTAGGGCTATATAGAAATTGCGACCTCTATCATGGTCAAACCACACATAT...

Protein

Download Protein FASTA

848 aa · TkA03G440030|TK1151|PROTEIN

MDGRRHSVDIPLSKALIALRRVRSLRDPSTNSSSRLATFVDNLNWETDSTNGIVLEQVNNHRLSDPTTYDLGLYRNCDLYHGQTTHIGQSGLLKPTQTPICENKSLSERYHSNYNDLPCMMPTSDYMEGTDSCNESMEVFIESERQDHNNIYKRRSRRKKHVRVSNIVGGDVISSPCLSMDDDGSSFMGSDCGYGETTPFSESPRSLSQKFRPKSFEELVGQNVVSKSLLNTISTQKITSFYLFHGPRGSGKSSAARIFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G440030
TK1151 IDTkA03G440030
OH-1004 IDLXL04_009444
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G440030
LocationChr03:109599158-109603310 (+)
DescriptionSimilar to At4g24790: Protein STICHEL-like 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g24790 Protein STICHEL-like 2. No verified direct reference in this release
At2g02480 Acts as a key regulator of trichome branching through an endoreduplication-independent pathway. No verified direct reference in this release
At1g14460 Protein STICHEL-like 1. No verified direct reference in this release
At5g45720 Protein STICHEL-like 4. No verified direct reference in this release
At4g18820 Protein STICHEL-like 3. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009444 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0010026 trichome differentiation Biological Process
GO:0010091 trichome branching Biological Process
GO:0005634 nucleus Cellular Component
GO:0005663 DNA replication factor C complex Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009360 DNA polymerase III complex Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003887 DNA-directed DNA polymerase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G14460
ath:AT2G02480
ath:AT4G24790
ath:AT5G45720
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.567
Rank 1 · TkA03G440030 · TK1151
Cytoplasm0.266
Rank 2 · TkA03G440030 · TK1151
Cell membrane0.110
Rank 3 · TkA03G440030 · TK1151
Plastid0.093
Rank 4 · TkA03G440030 · TK1151
Endoplasmic reticulum0.044
Rank 5 · TkA03G440030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_1623-48 aa
PF05496RuvB_N129-148 aa
PF05496RuvB_N212-265 aa
PF13177DNA_pol3_delta2222-372 aa
PF21960RCF1-5-like_lid224-235 aa
PF13191AAA_16236-264 aa
PF13401AAA_22240-360 aa
PF00004AAA242-372 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G440030PF13191AAA_1623480.1813.0
TkA03G440030PF05496RuvB_N1291480.006716.9
TkA03G440030PF05496RuvB_N2122650.006716.9
TkA03G440030PF13177DNA_pol3_delta22223722.5e-2280.3
TkA03G440030PF21960RCF1-5-like_lid2242350.0001222.7
TkA03G440030PF13191AAA_162362640.1813.0
TkA03G440030PF13401AAA_222403600.000820.4
TkA03G440030PF00004AAA2423721.6e-0526.1
TkA03G440030PF28429DUF83912602840.312.0
TkA03G440030PF12169DNA_pol3_gamma33403522.3e-0524.9
TkA03G440030PF22608DNAX_ATPase_lid3874225.1e-0730.1
TkA03G440030PF21960RCF1-5-like_lid3904290.0001222.7
TkA03G440030PF12169DNA_pol3_gamma34425592.3e-0524.9
TkA03G440030PF21694DNA_pol3_delta_C4544981.39.7
TkA03G440030PF13191AAA_164845290.1813.0
TkA03G440030PF23007DnaA_N-like_STI6116961.1e-2590.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JRP8Arabidopsis thalianasp|F4JRP8|STIL2_ARATH Protein STICHEL-like 246.900%Swiss-ProtMedium
O64728Arabidopsis thalianasp|O64728|STI_ARATH Protein STICHEL41.000%Swiss-ProtMedium
F4HW65Arabidopsis thalianasp|F4HW65|STIL1_ARATH Protein STICHEL-like 140.300%Swiss-ProtMedium
F4KEM0Arabidopsis thalianasp|F4KEM0|STIL4_ARATH Protein STICHEL-like 438.300%Swiss-ProtMedium
F4JRP0Arabidopsis thalianasp|F4JRP0|STIL3_ARATH Protein STICHEL-like 340.600%Swiss-ProtMedium

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