TkA03G434060 | RubberDandelionOmics

Gene overview

TkA03G434060

Reference: TK1151 Chr: Chr03 Coordinates: 107994596-107996536 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1905 bp · TkA03G434060|TK1151|cDNA

ATGACGACCATAGAAGGCCAAGACAGAGTCTTGGCAGCCGCTCAACAAATTGTCAAGAGCCTAAACATCAACACCAAAGCAACGGAGGATATGATCTTGATTCTCTCCAGCTTTGATAATCGGCTGTCGAACATCACCAATTTGATGGAGGGCGGTGCTGGTGATCGGTTTGTGACGGCGGAGAAAGTTATCCTCCGGCATGATTCAGGTCTCGAGTCGTCTGATGAGTATTTGGAAGCTGTTGATACAATTATCCAGTT...

CDS

Download CDS FASTA

1905 bp · TkA03G434060|TK1151|CDS

ATGACGACCATAGAAGGCCAAGACAGAGTCTTGGCAGCCGCTCAACAAATTGTCAAGAGCCTAAACATCAACACCAAAGCAACGGAGGATATGATCTTGATTCTCTCCAGCTTTGATAATCGGCTGTCGAACATCACCAATTTGATGGAGGGCGGTGCTGGTGATCGGTTTGTGACGGCGGAGAAAGTTATCCTCCGGCATGATTCAGGTCTCGAGTCGTCTGATGAGTATTTGGAAGCTGTTGATACAATTATCCAGTT...

Protein

Download Protein FASTA

634 aa · TkA03G434060|TK1151|PROTEIN

MTTIEGQDRVLAAAQQIVKSLNINTKATEDMILILSSFDNRLSNITNLMEGGAGDRFVTAEKVILRHDSGLESSDEYLEAVDTIIQLTEDLNIQSDADSEIMDRAENALQLAMSKLEDEFLHILIRNTVPLDIDELYGSIRKGSLSFASNEIEIGDDFESYREDDDGGSGSGYHHERGPSLGGDVFVDLIHPEAIKELKVIADRMIRSGYEKECCQVYSNVRRDVLNECLSILGVERLSIEEVQKIEWKILDEKMKKWIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G434060`
TK1151 ID	TkA03G434060
OH-1004 ID	LXL04_030803
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	63.700
Protein coverage (%)	TK1151 94.953 / OH-1004 97.533 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G434060

Location Chr03:107994596-107996536 (+)

Description Similar to EXO70B1: Exocyst complex component EXO70B1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58430`	Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.	Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole.2013 · DOI: 10.1111/tra.12101 The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
`At5g03540`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development.2006 · DOI: 10.1111/j.1365-313x.2006.02854.x Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin.2010 · DOI: 10.1111/j.1469-8137.2010.03372.x The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.2010 · DOI: 10.1105/tpc.110.074351 The exocyst complex contributes to PIN auxin efflux carrier recycling and polar auxin transport in Arabidopsis.2013 · DOI: 10.1111/tpj.12074 EXO70A1-mediated vesicle trafficking is critical for tracheary element development in Arabidopsis.2013 · DOI: 10.1105/tpc.113.112144 Microtubule-dependent targeting of the exocyst complex is necessary for xylem development in Arabidopsis.2017 · DOI: 10.1111/nph.14267
`At5g13150`	Required for global plant growth and for male transmission.	Expression and functional analyses of EXO70 genes in Arabidopsis implicate their roles in regulating cell type-specific exocytosis.2010 · DOI: 10.1104/pp.110.164178 EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen.2017 · DOI: 10.1104/pp.16.01282
`At5g61010`	Influences the subcellular localization patterns of other exocyst complex proteins (e.g. SEC5A, SEC15A, SEC15B and EXO84B) leading to their recruitment to exocyst, well-defined large punctate structures throughout the cytosol.	EXPO, an exocyst-positive organelle distinct from multivesicular endosomes and autophagosomes, mediates cytosol to cell wall exocytosis in Arabidopsis and tobacco cells.2010 · DOI: 10.1105/tpc.110.080697 Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals.2014 · DOI: 10.1091/mbc.e13-10-0586
`At5g13990`	Required for optimal tip growth of pollen tube.	EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen.2017 · DOI: 10.1104/pp.16.01282 Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2.2020 · DOI: 10.3389/fpls.2020.609600

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030803 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000919 cell plate assembly Biological Process

GO:0006887 exocytosis Biological Process

GO:0006952 defense response Biological Process

GO:0006955 immune response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0010089 xylem development Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0015031 protein transport Biological Process

GO:0032502 developmental process Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT5G03540

ath:AT5G13150

ath:AT5G13990

ath:AT5G58430

ath:AT5G61010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.548

Rank 1 · TkA03G434060 · TK1151

Cell membrane0.350

Rank 2 · TkA03G434060 · TK1151

Nucleus0.266

Rank 3 · TkA03G434060 · TK1151

Lysosome / Vacuole0.053

Rank 4 · TkA03G434060 · TK1151

Golgi apparatus0.051

Rank 5 · TkA03G434060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20669Exo70_N60-125 aa

PF03081Exo70_C256-617 aa

PF20669Exo70_N464-485 aa

PF20669Exo70_N543-572 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G434060	`PF20669`	Exo70_N	60	125	5.5e-11	43.3
TkA03G434060	`PF03081`	Exo70_C	256	617	2.7e-128	428.9
TkA03G434060	`PF20669`	Exo70_N	464	485	5.5e-11	43.3
TkA03G434060	`PF20669`	Exo70_N	543	572	5.5e-11	43.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FGH9`	Arabidopsis thaliana	sp\|Q9FGH9\|E70B1_ARATH Exocyst complex component EXO70B1	35.300%	Swiss-Prot	Medium
`Q9LZD3`	Arabidopsis thaliana	sp\|Q9LZD3\|E70A1_ARATH Exocyst complex component EXO70A1	34.900%	Swiss-Prot	Medium
`Q9FY95`	Arabidopsis thaliana	sp\|Q9FY95\|E70C1_ARATH Exocyst complex component EXO70C1	33.000%	Swiss-Prot	Medium
`Q9FNR3`	Arabidopsis thaliana	sp\|Q9FNR3\|E70E2_ARATH Exocyst complex component EXO70E2	33.200%	Swiss-Prot	Medium
`Q9FFX6`	Arabidopsis thaliana	sp\|Q9FFX6\|E70C2_ARATH Exocyst complex component EXO70C2	35.700%	Swiss-Prot	Medium

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