TkA03G430590 | RubberDandelionOmics

Gene overview

TkA03G430590

Reference: TK1151 Chr: Chr03 Coordinates: 107176461-107181370 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3007 bp · TkA03G430590|TK1151|cDNA

GGAAAATAGGGGATAAGCTTTGACCAGTCAAAATTGAATCAGGAAGAGGCGGTCGCCTCTTATCCCGTTTCTCTGTGTGCGTCGAAGGAAAGGGAAAACAAAAAGAACGAGAGAGAGAGAGAGACAACGAAGTCGGGAGAGGCAAAGAGAAACCGAGAGCCAGAAGAACCGAGAATTGGAGGACGAAGGAAACAGCGGGACGAGGCGGAGGAGCAGCAGGCAGCGCTGCTGCTGTTGGACGGTTCTAGAGGCCGGAAAAA...

CDS

Download CDS FASTA

2235 bp · TkA03G430590|TK1151|CDS

ATGCAAACGGGGCGGGGATTCCCCGCTACCCGCGGAGACCCGAACCGAATGGAGCGAGGATTCCCCGTTTTAGCGGGTAATGGGTCGGGGATGGAGCGCCGACAAACAACAATCTTCATGGAAGATCCTACCGAAAATCTCATCAATGAGAATGAAGAACAAACTCAACAGCCTACAAGAGATGCAGAAGTGCTGCAACAACAAGATGCTGGAACTGGTGCACAAGCTAATGGTACAACAGATGCACAAGTTGATGGTAT...

Protein

Download Protein FASTA

744 aa · TkA03G430590|TK1151|PROTEIN

MQTGRGFPATRGDPNRMERGFPVLAGNGSGMERRQTTIFMEDPTENLINENEEQTQQPTRDAEVLQQQDAGTGAQANGTTDAQVDGINNTETFEATDAQADGTNRRLTSVVWNHFKKAKIEGVDKAICNYCGKKLSGKSKNGTTHLRDHYNICMARKNKDIRQTILNPRQEKKDGPVSLGTHTFDQNVSRSELAKMIVLHEYPINMVEHIGFRNFVNSVNPLFKHVSRTTIKSDIKRIFDIQKTKIKKIMSANQGRVAVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G430590`
TK1151 ID	TkA03G430590
OH-1004 ID	LXL04_006073
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.500
Protein coverage (%)	TK1151 77.688 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G430590

Location Chr03:107176461-107181370 (-)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0733400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0239150`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0583200`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006073 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

dosa:Os03g0733400

dosa:Os05g0239150

dosa:Os05g0583200

osa:4339741

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.918

Rank 1 · TkA03G430590 · TK1151

Cytoplasm0.138

Rank 2 · TkA03G430590 · TK1151

Mitochondrion0.030

Rank 3 · TkA03G430590 · TK1151

Cell membrane0.014

Rank 4 · TkA03G430590 · TK1151

Endoplasmic reticulum0.009

Rank 5 · TkA03G430590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02892zf-BED109-149 aa

PF14471DUF4428115-139 aa

PF13408Zn_ribbon_recom126-159 aa

PF27041ZBED1_RNase-like260-355 aa

PF26742DUF8247272-319 aa

PF14372hAT-like_RNase-H316-346 aa

PF27039ZBED1_RNase-like_helical360-468 aa

PF14372hAT-like_RNase-H440-466 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G430590	`PF02892`	zf-BED	109	149	5.4e-08	33.5
TkA03G430590	`PF14471`	DUF4428	115	139	0.044	14.6
TkA03G430590	`PF13408`	Zn_ribbon_recom	126	159	0.26	12.4
TkA03G430590	`PF27041`	ZBED1_RNase-like	260	355	5.6e-27	94.5
TkA03G430590	`PF26742`	DUF8247	272	319	0.0019	18.8
TkA03G430590	`PF14372`	hAT-like_RNase-H	316	346	4.4e-27	94.9
TkA03G430590	`PF27039`	ZBED1_RNase-like_helical	360	468	1e-32	113.2
TkA03G430590	`PF14372`	hAT-like_RNase-H	440	466	4.4e-27	94.9
TkA03G430590	`PF27041`	ZBED1_RNase-like	454	473	5.6e-27	94.5
TkA03G430590	`PF14372`	hAT-like_RNase-H	489	580	4.4e-27	94.9
TkA03G430590	`PF05699`	Dimer_Tnp_hAT	627	709	1e-30	106.0
TkA03G430590	`PF02892`	zf-BED	718	724	5.4e-08	33.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6AVI0`	Oryza sativa subsp. japonica	sp\|Q6AVI0\|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2	34.600%	Swiss-Prot	Medium
`B9FJG3`	Oryza sativa subsp. japonica	sp\|B9FJG3\|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1	33.600%	Swiss-Prot	Medium
`Q75HY5`	Oryza sativa subsp. japonica	sp\|Q75HY5\|RSLE3_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 3	32.600%	Swiss-Prot	Medium

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