TkA03G424270 | RubberDandelionOmics

Gene overview

TkA03G424270

Reference: TK1151 Chr: Chr03 Coordinates: 105638694-105641592 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1400 bp · TkA03G424270|TK1151|cDNA

ATGAAACCCTAAATCTCCAGTCTGATTCCTACCATCACTATCTTCATCTGAACTTCCCACCTCCTCCCTTTCGTCACCATATTCATCTGCATTTGCCTTCTTCTCCTCACCGCAATCTTCATCTCTCACCAAATCTCTCAAAGCCTAAGTTCAAATTAATTGGAGGTTTCGGTTGTACAAAGCCTTCGATTTAGAAGTCGACGTCGGTTTCTCTTCAAAGGGGCGACGGCATTGAAACGATTTCTATTATAATCTCTTGT...

CDS

Download CDS FASTA

612 bp · TkA03G424270|TK1151|CDS

ATGTTGCCTTATTATCACTGCTACTTGATGCTTTGCAAAAGTGGTGTAAGGAAGAGGCGAGCTGCAACCGGAGCTGTTTTATTCTTGTTTGCATTTCTGTATGCTTTTTGGCGATTGGGAATCCATTTTCCTATGCCTTCACCTGATAAAGGATTTTTCACCATTCCACAGCTTGTGAGTAGAATTGGAGTAATTGGTGTGACTGTGATGGCTGATTTATCTGGTTTTGGAGCTGTGAATCTTCCATACAGTTATCTATC...

Protein

Download Protein FASTA

203 aa · TkA03G424270|TK1151|PROTEIN

MLPYYHCYLMLCKSGVRKRRAATGAVLFLFAFLYAFWRLGIHFPMPSPDKGFFTIPQLVSRIGVIGVTVMADLSGFGAVNLPYSYLSLFIREIEGIEIKALERQLMQSIETSIGKKKKIILSQMEMERVQGQEESYKAWSFFKRTVGTVVRSVQDDQKEQGGVCPAVAIKGVWGKGIFRCRLQQTWRSQGFCRRCQMQHRGWI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G424270`
TK1151 ID	TkA03G424270
OH-1004 ID	LXL04_035452
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.500
Protein coverage (%)	TK1151 78.818 / OH-1004 34.188 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G424270

Location Chr03:105638694-105641592 (+)

Description Similar to GTG1: GPCR-type G protein 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64990`	Abscisic acid receptor.	Two novel GPCR-type G proteins are abscisic acid receptors in Arabidopsis.2009 · DOI: 10.1016/j.cell.2008.12.026 G protein-coupled receptor-type G proteins are required for light-dependent seedling growth and fertility in Arabidopsis.2012 · DOI: 10.1105/tpc.112.098681
`At4g27630`	Abscisic acid receptor.	Two novel GPCR-type G proteins are abscisic acid receptors in Arabidopsis.2009 · DOI: 10.1016/j.cell.2008.12.026 G protein-coupled receptor-type G proteins are required for light-dependent seedling growth and fertility in Arabidopsis.2012 · DOI: 10.1105/tpc.112.098681

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XX57`	Involved in chilling tolerance.	No verified direct reference in this release
`Os04g0600800`	Involved in chilling tolerance.	COLD1 confers chilling tolerance in rice.2015 · DOI: 10.1016/j.cell.2015.01.046

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035452 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0015031 protein transport Biological Process

GO:0051452 intracellular pH reduction Biological Process

GO:0070417 cellular response to cold Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0030660 Golgi-associated vesicle membrane Cellular Component

KEGG gene cross-reference

ath:AT1G64990

ath:AT4G27630

dosa:Os04g0600800

gga:418459

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.504

Rank 1 · TkA03G424270 · TK1151

Cytoplasm0.179

Rank 2 · TkA03G424270 · TK1151

Nucleus0.177

Rank 3 · TkA03G424270 · TK1151

Cell membrane0.176

Rank 4 · TkA03G424270 · TK1151

Golgi apparatus0.152

Rank 5 · TkA03G424270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12537GPHR_N52-118 aa

PF12537GPHR_N136-146 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G424270	`PF12537`	GPHR_N	52	118	4.4e-20	72.3
TkA03G424270	`PF12537`	GPHR_N	136	146	4.4e-20	72.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XIP7`	Arabidopsis thaliana	sp\|Q9XIP7\|GTG1_ARATH GPCR-type G protein 1	78.100%	Swiss-Prot	High
`Q0WQG8`	Arabidopsis thaliana	sp\|Q0WQG8\|GTG2_ARATH GPCR-type G protein 2	73.300%	Swiss-Prot	High
`A2XX57`	Oryza sativa subsp. indica	sp\|A2XX57\|COLD1_ORYSI GPCR-type G protein COLD1	76.900%	Swiss-Prot	High
`Q7X7S8`	Oryza sativa subsp. japonica	sp\|Q7X7S8\|COLD1_ORYSJ GPCR-type G protein COLD1	76.900%	Swiss-Prot	High

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