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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G415250
Reference: TK1151 Chr: Chr03 Coordinates: 103278754-103279776 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

751 bp · TkA03G415250|TK1151|cDNA

TGGCGTCCACGCTTTCCCACCAAACGCCTAATCGCCTATACAAAAGATTACATGCATCTATCTCTTCGATTATCTCCATCCAGACTATGGCTCTCCAGACGCCACTCAGGCCACCAACCACCAGATCAACACCGCCTCTATCTCCGGCAGCCGGCAGCAATGTCGGCCTTCGCCCCCCAGGCCGACCCAACCTCCTAGCAATGAAATCATCCTTCTATCTCTCACCGTCCCTTCAATTATTGCTTCCTCGTCATCAGCCT...

CDS

Download CDS FASTA

495 bp · TkA03G415250|TK1151|CDS

ATGGCTCTCCAGACGCCACTCAGGCCACCAACCACCAGATCAACACCGCCTCTATCTCCGGCAGCCGGCAGCAATGTCGGCCTTCGCCCCCCAGGCCGACCCAACCTCCTAGCAATGAAATCATCCTTCTATCTCTCACCGTCCCTTCAATTATTGCTTCCTCGTCATCAGCCTTCAGCCGCACCCAAATTCGCTATGCGAACTGCCTCCAAACAAGCTTACATTTGCCGCGACTGCGGGTACATCTATAGCGATAAAAC...

Protein

Download Protein FASTA

164 aa · TkA03G415250|TK1151|PROTEIN

MALQTPLRPPTTRSTPPLSPAAGSNVGLRPPGRPNLLAMKSSFYLSPSLQLLLPRHQPSAAPKFAMRTASKQAYICRDCGYIYSDKTPFEKLPDKYFCPVCGAPKRRFREYTPPVTKNANSADVRKARKAELKRDEAIGKALPIAIAVGVVALVALYFYLNSTV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G415250
TK1151 IDTkA03G415250
OH-1004 IDLXL04_009277
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G415250
LocationChr03:103278754-103279776 (-)
DescriptionSimilar to rub: Rubredoxin (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009277 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0043448 alkane catabolic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005506 iron ion binding Molecular Function
GO:0009055 electron transfer activity Molecular Function
KEGG gene cross-reference
cte:CT1100
dds:Ddes_2011
pab:PAB7224
pfu:PF1282
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984
Rank 1 · TkA03G415250 · TK1151
Mitochondrion0.018
Rank 2 · TkA03G415250 · TK1151
Nucleus0.016
Rank 3 · TkA03G415250 · TK1151
Cytoplasm0.010
Rank 4 · TkA03G415250 · TK1151
Cell membrane0.009
Rank 5 · TkA03G415250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09297Zn_ribbon_NUD67-79 aa
PF25164CoiA_N68-80 aa
PF23451Zn_ribbon_PaaD68-80 aa
PF13824zf-Mss5169-83 aa
PF01155HypA71-105 aa
PF17283Zn_ribbon_SprT72-80 aa
PF23458DUF713073-110 aa
PF14354Lar_restr_allev73-84 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G415250PF09297Zn_ribbon_NUD67790.510.8
TkA03G415250PF25164CoiA_N68800.4910.7
TkA03G415250PF23451Zn_ribbon_PaaD68801.69.2
TkA03G415250PF13824zf-Mss5169830.5211.2
TkA03G415250PF01155HypA711050.311.8
TkA03G415250PF17283Zn_ribbon_SprT72800.4711.2
TkA03G415250PF23458DUF7130731100.02515.2
TkA03G415250PF14354Lar_restr_allev73840.2112.6
TkA03G415250PF21349RUBY_RBDX741088.3e-0729.1
TkA03G415250PF00301Rubredoxin741088.8e-0729.6
TkA03G415250PF09723Zn_ribbon_8741050.004417.7
TkA03G415250PF08271Zn_Ribbon_TF74850.03314.4
TkA03G415250PF08792A2L_zn_ribbon74830.0713.5
TkA03G415250PF14803Zn_ribbon_Nudix74820.1312.9
TkA03G415250PF02150Zn_ribbon_RPB974830.710.5
TkA03G415250PF08273Zn_Ribbon_Prim74800.910.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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