TkA03G413120 | RubberDandelionOmics

Gene overview

TkA03G413120

Reference: TK1151 Chr: Chr03 Coordinates: 102751258-102752451 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1164 bp · TkA03G413120|TK1151|cDNA

ATGAACTCCATGGAAGCGAAGACAAAGAAAAGAAGCTTGCTTGGCGGAAAGAAGTCATGCGAGGGCAAACGAAGTAAACAAGACGATTGGAAGCTTGTGCAGATGAAGTATGGAGACGGAATTGCTTGGTCCAGAGGTGCGATGATAGGTAAAGGAAGTTTCGGGTGTGTTTTTCTAGCGAAATTGAAGAAACCCAAATCGAAATACAGCTCTTATCCACCGGTTATGGCTGTGAAATCGGCAGAGGCCTCTGCTTCCGG...

CDS

Download CDS FASTA

1164 bp · TkA03G413120|TK1151|CDS

ATGAACTCCATGGAAGCGAAGACAAAGAAAAGAAGCTTGCTTGGCGGAAAGAAGTCATGCGAGGGCAAACGAAGTAAACAAGACGATTGGAAGCTTGTGCAGATGAAGTATGGAGACGGAATTGCTTGGTCCAGAGGTGCGATGATAGGTAAAGGAAGTTTCGGGTGTGTTTTTCTAGCGAAATTGAAGAAACCCAAATCGAAATACAGCTCTTATCCACCGGTTATGGCTGTGAAATCGGCAGAGGCCTCTGCTTCCGG...

Protein

Download Protein FASTA

387 aa · TkA03G413120|TK1151|PROTEIN

MNSMEAKTKKRSLLGGKKSCEGKRSKQDDWKLVQMKYGDGIAWSRGAMIGKGSFGCVFLAKLKKPKSKYSSYPPVMAVKSAEASASGSIQKEKEVMDTTRGCPNLIRCFGDELTIGENGQMVYNLLLEFGSGGTLADLIKKSGKGLPEVEVRRYTKSILRGLTHIHKKGYVHCDLKPENILLVSNSRDNFTAKIGDLGLAKRAKQSKKNKLGPYWRGTPMYLSPEAVIDGVQEPPSDVWAVGCIVFEMLTGKPLWFSDND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G413120`
TK1151 ID	TkA03G413120
OH-1004 ID	LXL04_009231
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	57.200
Protein coverage (%)	TK1151 97.933 / OH-1004 94.988 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G413120

Location Chr03:102751258-102752451 (+)

Description Similar to MAPKKK20: Mitogen-activated protein kinase kinase kinase 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50310`	Mitogen-activated protein kinase kinase (MAPKK) that phosphorylates both MKK3 and MPK18 and regulate two separate signaling pathways involved in root microtubule functions.	Arabidopsis MKKK20 is involved in osmotic stress response via regulation of MPK6 activity.2012 · DOI: 10.1007/s00299-011-1157-0 AIK1, A Mitogen-Activated Protein Kinase, Modulates Abscisic Acid Responses through the MKK5-MPK6 Kinase Cascade.2017 · DOI: 10.1104/pp.16.01386 The Arabidopsis Mitogen-Activated Protein Kinase Kinase Kinase 20 (MKKK20) Acts Upstream of MKK3 and MPK18 in Two Separate Signaling Pathways Involved in Root Microtubule Functions.2017 · DOI: 10.3389/fpls.2017.01352

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009231 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

KEGG gene cross-reference

ath:AT1G05100

ath:AT1G09000

ath:AT2G32510

ath:AT3G06030

ath:AT3G50310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.922

Rank 1 · TkA03G413120 · TK1151

Cytoplasm0.118

Rank 2 · TkA03G413120 · TK1151

Cell membrane0.040

Rank 3 · TkA03G413120 · TK1151

Endoplasmic reticulum0.023

Rank 4 · TkA03G413120 · TK1151

Plastid0.021

Rank 5 · TkA03G413120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase45-315 aa

PF07714PK_Tyr_Ser-Thr47-304 aa

PF03109ABC1125-213 aa

PF06293Kdo147-206 aa

PF17667Pkinase_fungal160-222 aa

PF05445Pox_ser-thr_kin168-187 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G413120	`PF00069`	Pkinase	45	315	3.5e-48	165.0
TkA03G413120	`PF07714`	PK_Tyr_Ser-Thr	47	304	3.4e-27	96.1
TkA03G413120	`PF03109`	ABC1	125	213	0.001	19.0
TkA03G413120	`PF06293`	Kdo	147	206	0.16	12.1
TkA03G413120	`PF17667`	Pkinase_fungal	160	222	0.13	11.7
TkA03G413120	`PF05445`	Pox_ser-thr_kin	168	187	0.35	10.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SND6`	Arabidopsis thaliana	sp\|Q9SND6\|M3K20_ARATH Mitogen-activated protein kinase kinase kinase 20	42.300%	Swiss-Prot	Medium

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