TkA03G409190 | RubberDandelionOmics

Gene overview

TkA03G409190

Reference: TK1151 Chr: Chr03 Coordinates: 101733329-101733670 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

342 bp · TkA03G409190|TK1151|cDNA

ATGGCGCTCTCCTATGTTGAAATCCCAAGGGACACAATGGCCTTGTCTCCTCCCGATTACATCAAGGGCTGTGAATTACTAGAGAGGGAACTCAAGTTATTGCAGGTAAGACTTCTCTCTAAAACCCCCGATACAGAAGGTCTTCAAGGTTTCCGGAACATTCTCTCGTCTGTCGGAGGCGGCGGTGAAGCCACCATCACTACTGGATTCGTCACCGGAGAAGGAGGAAGAAGGGCCTGGGGCATGCGATTTCAAAGAGA...

CDS

Download CDS FASTA

342 bp · TkA03G409190|TK1151|CDS

ATGGCGCTCTCCTATGTTGAAATCCCAAGGGACACAATGGCCTTGTCTCCTCCCGATTACATCAAGGGCTGTGAATTACTAGAGAGGGAACTCAAGTTATTGCAGGTAAGACTTCTCTCTAAAACCCCCGATACAGAAGGTCTTCAAGGTTTCCGGAACATTCTCTCGTCTGTCGGAGGCGGCGGTGAAGCCACCATCACTACTGGATTCGTCACCGGAGAAGGAGGAAGAAGGGCCTGGGGCATGCGATTTCAAAGAGA...

Protein

Download Protein FASTA

113 aa · TkA03G409190|TK1151|PROTEIN

MALSYVEIPRDTMALSPPDYIKGCELLERELKLLQVRLLSKTPDTEGLQGFRNILSSVGGGGEATITTGFVTGEGGRRAWGMRFQRERERERERERERERESSDVDGNYFGLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G409190`
TK1151 ID	TkA03G409190
OH-1004 ID	LXL04_009207
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.600
Protein coverage (%)	TK1151 100.000 / OH-1004 70.253 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G409190

Location Chr03:101733329-101733670 (+)

Description Similar to ARC6: Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42480`	Component of the plastid division machinery consisting in a binary fission accomplished by the simultaneous constriction of the FtsZ ring on the stromal side of the inner envelope membrane, and the ARC5 ring on the cytosolic side of the outer envelope membrane.	The distinctive roles of five different ARC genes in the chloroplast division process in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00500.x Reduced gravitropism in inflorescence stems and hypocotyls, but not roots, of Arabidopsis mutants with large plastids.2002 · DOI: 10.1034/j.1399-3054.2002.1140417.x arc6, A Fertile Arabidopsis Mutant with Only Two Mesophyll Cell Chloroplasts.1994 · DOI: 10.1104/pp.106.3.1169 ARC6 is a J-domain plastid division protein and an evolutionary descendant of the cyanobacterial cell division protein Ftn2.2003 · DOI: 10.1105/tpc.013292 Effects of arc3, arc5 and arc6 mutations on plastid morphology and stromule formation in green and nongreen tissues of Arabidopsis thaliana.2008 · DOI: 10.1111/j.1751-1097.2008.00437.x Arabidopsis ARC6 coordinates the division machineries of the inner and outer chloroplast membranes through interaction with PDV2 in the intermembrane space.2008 · DOI: 10.1105/tpc.108.061440 The Arabidopsis arc5 and arc6 mutations differentially affect plastid morphology in pavement and guard cells in the leaf epidermis.2018 · DOI: 10.1371/journal.pone.0192380 MCD1 Associates with FtsZ Filaments via the Membrane-Tethering Protein ARC6 to Guide Chloroplast Division.2018 · DOI: 10.1105/tpc.18.00189 arc6, an extreme chloroplast division mutant of Arabidopsis also alters proplastid proliferation and morphology in shoot and root apices.1995 · DOI: 10.1242/jcs.108.9.2937 Plastid ontogeny during petal development in Arabidopsis.1998 · DOI: 10.1104/pp.116.2.797

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009207 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0010020 chloroplast fission Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT5G42480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.428

Rank 1 · TkA03G409190 · TK1151

Cytoplasm0.403

Rank 2 · TkA03G409190 · TK1151

Mitochondrion0.144

Rank 3 · TkA03G409190 · TK1151

Cell membrane0.093

Rank 4 · TkA03G409190 · TK1151

Endoplasmic reticulum0.050

Rank 5 · TkA03G409190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25515Arm_PDR1-37 aa

PF25515Arm_PDR45-66 aa

PF13054DUF391583-102 aa

PF03154Atrophin-186-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G409190	`PF25515`	Arm_PDR	1	37	7.4e-06	26.8
TkA03G409190	`PF25515`	Arm_PDR	45	66	7.4e-06	26.8
TkA03G409190	`PF13054`	DUF3915	83	102	0.033	14.8
TkA03G409190	`PF03154`	Atrophin-1	86	101	2.2	7.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIG9`	Arabidopsis thaliana	sp\|Q9FIG9\|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic	57.100%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card