RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G405850
Reference: TK1151 Chr: Chr03 Coordinates: 100935201-100937813 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1630 bp · TkA03G405850|TK1151|cDNA

TCACACGCTTGAAGCCAAGCTCACACCGCGCACACACGAGTGAATATACAGGATAAGCCCTCTGTGCCCTATCAATCGCGAAAGTTACGATCATAAACCCCAGTCAGTCACAAAAACTAACATCCGACTTCCAATTCGACGATGGCCGCCATGGCGTCGACATCGATGAACTTGACGACCACCTTTGTTGGACTAGCCAAGCTTAAGAAAACTTCATTCCCTCGACTGTTGAGAAATATCACTTTCCGCCATCGAGGTTT...

CDS

Download CDS FASTA

1356 bp · TkA03G405850|TK1151|CDS

ATGGCCGCCATGGCGTCGACATCGATGAACTTGACGACCACCTTTGTTGGACTAGCCAAGCTTAAGAAAACTTCATTCCCTCGACTGTTGAGAAATATCACTTTCCGCCATCGAGGTTTTGCGACAACCTCATGTGCCATCCGTCCACCACTCGCCGCCGTTAGTTTATCCAAAGCAAAGAGATTGCCACGCTACTTATCTGTTGCCGCAACGGCGACGCCGACACAGCAGGACGAGGATTCCGATGTCTTGACCAAAAT...

Protein

Download Protein FASTA

451 aa · TkA03G405850|TK1151|PROTEIN

MAAMASTSMNLTTTFVGLAKLKKTSFPRLLRNITFRHRGFATTSCAIRPPLAAVSLSKAKRLPRYLSVAATATPTQQDEDSDVLTKIPPDNRIPATIITGFLGSGKTTLLNHILTADHDKRIAVIENEYGEVDIDGSLVAAKSVGVEDIVMLNNGCLCCTVRGDLVRMIGELVNKKKGKFDHIVIETTGLANPAPIIQTFYAEDQIFNDVKLDGVVTLVDAKHANIHLDDIKPEGVVNEAIEQIAYADRIIVNKTDLVGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G405850
TK1151 IDTkA03G405850
OH-1004 IDLXL04_009182
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G405850
LocationChr03:100935201-100937813 (-)
DescriptionSimilar to CBWD2: COBW domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009182 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006882 intracellular zinc ion homeostasis Biological Process
GO:0051604 protein maturation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016787 hydrolase activity Molecular Function
GO:0140827 zinc chaperone activity Molecular Function
KEGG gene cross-reference
hsa:150472
hsa:220869
hsa:55871
rno:171057
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.918
Rank 1 · TkA03G405850 · TK1151
Mitochondrion0.101
Rank 2 · TkA03G405850 · TK1151
Cytoplasm0.040
Rank 3 · TkA03G405850 · TK1151
Nucleus0.031
Rank 4 · TkA03G405850 · TK1151
Peroxisome0.021
Rank 5 · TkA03G405850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03308MeaB62-138 aa
PF25199nSTAND_NTPase582-124 aa
PF13555AAA_2987-116 aa
PF13191AAA_1692-128 aa
PF00009GTP_EFTU93-121 aa
PF09439SRPRB93-127 aa
PF02492cobW94-278 aa
PF03193RsgA_GTPase94-126 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G405850PF03308MeaB621380.0912.5
TkA03G405850PF25199nSTAND_NTPase5821240.01715.7
TkA03G405850PF13555AAA_29871160.01515.8
TkA03G405850PF13191AAA_16921280.1313.4
TkA03G405850PF00009GTP_EFTU931210.02414.9
TkA03G405850PF09439SRPRB931270.1412.3
TkA03G405850PF02492cobW942781.9e-58197.8
TkA03G405850PF03193RsgA_GTPase941260.03114.8
TkA03G405850PF13173AAA_14941260.1113.2
TkA03G405850PF10412TrwB_AAD_bind951250.2411.0
TkA03G405850PF00437T2SSE961270.0313.7
TkA03G405850PF13401AAA_22961250.03715.0
TkA03G405850PF00005ABC_tran961190.312.4
TkA03G405850PF05729NACHT961160.3211.5
TkA03G405850PF10236DAP3961250.3510.8
TkA03G405850PF20720nSTAND3971240.1612.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser