TkA03G395860 | RubberDandelionOmics

Gene overview

TkA03G395860

Reference: TK1151 Chr: Chr03 Coordinates: 98409672-98414804 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3764 bp · TkA03G395860|TK1151|cDNA

AAAATCCAAAAAATAAAAGTCATCAATAAGATGGAATGAACCAACAAATTTGCACTGGTATTAAAAAGCAGAAATAAGTCATCACTACGGTATGGGAACACACGGAAAGGTAAGAAGCGAAACCGGCCTTACGAGTATAAAGGTGCACAAAAATGGTGGAAATTTTTGGTTTCAGTGTCCTCAATCCATTGCAAAGAATCCAAAGCAACTTCCAACAAGCTAATTGCGATTGAGGAAGATAACAAGGCGATGGGTTTAGG...

CDS

Download CDS FASTA

2295 bp · TkA03G395860|TK1151|CDS

ATGATTCATGCTCAAGGAACTGCAAAACATACCTGTTGCATGCTGGCAGTTTTATCCGGGAGAAATTCAAATAATAACAACGATTTTGATGTTCATCGCACTGGCTTCAAATTCCCCTTTCCAGAGATCACTTCTTCTGGACGTTTAGAGGTTCAAACATTAAATAATCCCACCACCGATGAATTCCGTAAGGTTCTGGATTCCGTACAGCCAAATATCGTATACTTTCAAGGAGAAAAGCTTCAAAACTATGAAGTTGG...

Protein

Download Protein FASTA

764 aa · TkA03G395860|TK1151|PROTEIN

MIHAQGTAKHTCCMLAVLSGRNSNNNNDFDVHRTGFKFPFPEITSSGRLEVQTLNNPTTDEFRKVLDSVQPNIVYFQGEKLQNYEVGSLWEGAEDLPGLFTSYLPTTVYLEFPNGEEVAETLHSKGIPYVIYWKHSFSCYAACHFHHALFSVVQSSSSHTWDAFHLAHSSFRLYCVRNNLVGQTEKVNTKLGPCLLGDPPKINVPPPEAAGGEDDEEKYPEDLPAIKIYDDDVTVRFLVCGSASTLDTSILEPLEDGLNA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G395860`
TK1151 ID	TkA03G395860
OH-1004 ID	LXL04_009069
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G395860

Location Chr03:98409672-98414804 (-)

Description Similar to ARID4: AT-rich interactive domain-containing protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g43240`	AT-rich interactive domain-containing protein 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009069 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G43240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.840

Rank 1 · TkA03G395860 · TK1151

Cytoplasm0.201

Rank 2 · TkA03G395860 · TK1151

Cell membrane0.051

Rank 3 · TkA03G395860 · TK1151

Endoplasmic reticulum0.028

Rank 4 · TkA03G395860 · TK1151

Golgi apparatus0.019

Rank 5 · TkA03G395860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01388ARID417-445 aa

PF01388ARID589-686 aa

PF00628PHD697-747 aa

PF31197PHD_JHD1697-722 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G395860	`PF01388`	ARID	417	445	2.6e-13	50.9
TkA03G395860	`PF01388`	ARID	589	686	2.6e-13	50.9
TkA03G395860	`PF00628`	PHD	697	747	0.0015	19.2
TkA03G395860	`PF31197`	PHD_JHD1	697	722	0.089	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6NQ79`	Arabidopsis thaliana	sp\|Q6NQ79\|ARID4_ARATH AT-rich interactive domain-containing protein 4	63.000%	Swiss-Prot	High

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