TkA03G390060 | RubberDandelionOmics

Gene overview

TkA03G390060

Reference: TK1151 Chr: Chr03 Coordinates: 96662878-96667439 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2284 bp · TkA03G390060|TK1151|cDNA

AACGAAATGGATGGAAGGAGAAAGAAAACAGGTATAAATTTGAGCCTGTAATAATCTTGTAGAATGGGTGTCCGGTGGTATCTGGGTTGTCCTCAGGTCAATCGCCGGCGGAGGACAAGCCACCATGGACGGCGTTGGCGGAGCCATAACCACGGCTATAGCAATCGATAAAGATAAAAATAGCCAATATGCAGTTAAATGGGCTCTTGAGAACGTCATCGACAATATGTCCTGCGTTGTGCTTCTTCATGTTCTCACCC...

CDS

Download CDS FASTA

1791 bp · TkA03G390060|TK1151|CDS

ATGGACGGCGTTGGCGGAGCCATAACCACGGCTATAGCAATCGATAAAGATAAAAATAGCCAATATGCAGTTAAATGGGCTCTTGAGAACGTCATCGACAATATGTCCTGCGTTGTGCTTCTTCATGTTCTCACCCAAACCACTTTACCTGATGAAGCTGGGATTGGCAAGGATGGTCGGCCCCCAACAGAAGCTGAAATGCAGCAGTTTTTTCATCCCCTTTGTTCATTTTGTGCTCTAAAAGGGGTTAGAACAAAGGA...

Protein

Download Protein FASTA

596 aa · TkA03G390060|TK1151|PROTEIN

MDGVGGAITTAIAIDKDKNSQYAVKWALENVIDNMSCVVLLHVLTQTTLPDEAGIGKDGRPPTEAEMQQFFHPLCSFCALKGVRTKEVVLKDSDVSNALILYITRNAISHLVVGLRSRLTRWSKPNSISGTKAFGRTPYARSIARRVGHDDFTVMPPRNNLLASRTLPGEFHDFNANLSCKILEKSRTSNVPGLSVFSQNADVDDEILRVKVELKNTMDVYHSACTEATNAKQKETEIYQHMPPEAAEAARAMLEIEKQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G390060`
TK1151 ID	TkA03G390060
OH-1004 ID	LXL04_008252
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G390060

Location Chr03:96662878-96667439 (-)

Description Similar to PUB52: U-box domain-containing protein 52

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61550`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At2g19410`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At5g61560`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At4g25160`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At5g51270`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008252 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G19410

ath:AT4G25160

ath:AT5G61550

ath:AT5G61560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.455

Rank 1 · TkA03G390060 · TK1151

Cytoplasm0.379

Rank 2 · TkA03G390060 · TK1151

Nucleus0.258

Rank 3 · TkA03G390060 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA03G390060 · TK1151

Golgi apparatus0.044

Rank 5 · TkA03G390060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase5-30 aa

PF00582Usp12-118 aa

PF01636APH241-281 aa

PF00582Usp244-283 aa

PF00069Pkinase326-576 aa

PF07714PK_Tyr_Ser-Thr328-580 aa

PF03109ABC1337-358 aa

PF01636APH429-459 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G390060	`PF00069`	Pkinase	5	30	1.5e-36	126.9
TkA03G390060	`PF00582`	Usp	12	118	2.4e-06	28.8
TkA03G390060	`PF01636`	APH	241	281	0.037	14.5
TkA03G390060	`PF00582`	Usp	244	283	2.4e-06	28.8
TkA03G390060	`PF00069`	Pkinase	326	576	1.5e-36	126.9
TkA03G390060	`PF07714`	PK_Tyr_Ser-Thr	328	580	3.6e-39	135.3
TkA03G390060	`PF03109`	ABC1	337	358	0.0083	16.0
TkA03G390060	`PF01636`	APH	429	459	0.037	14.5
TkA03G390060	`PF03109`	ABC1	431	480	0.0083	16.0
TkA03G390060	`PF12330`	Haspin_kinase	442	469	0.073	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKG6`	Arabidopsis thaliana	sp\|Q9FKG6\|PUB52_ARATH U-box domain-containing protein 52	45.100%	Swiss-Prot	Medium
`Q8S8S7`	Arabidopsis thaliana	sp\|Q8S8S7\|PUB34_ARATH U-box domain-containing protein 34	45.200%	Swiss-Prot	Medium
`Q9FKG5`	Arabidopsis thaliana	sp\|Q9FKG5\|PUB51_ARATH U-box domain-containing protein 51	41.900%	Swiss-Prot	Medium
`Q9SW11`	Arabidopsis thaliana	sp\|Q9SW11\|PUB35_ARATH U-box domain-containing protein 35	51.400%	Swiss-Prot	Medium
`Q9LU47`	Arabidopsis thaliana	sp\|Q9LU47\|PUB53_ARATH Putative U-box domain-containing protein 53	49.200%	Swiss-Prot	Medium

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