TkA03G388700 | RubberDandelionOmics

Gene overview

TkA03G388700

Reference: TK1151 Chr: Chr03 Coordinates: 96252180-96256819 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1328 bp · TkA03G388700|TK1151|cDNA

GGAACAAAGGGTTCTGCGATCTACAAACACGACTACGAGAGCTTCGGGTCCCAATGTTCTTAATGCAAGGAGCAGTTCGTCCTTCTCCTTCTTCCCTGACCCGTTTCGCTCGTCTCACCCGCCACCTATCATTCTCAAACACCAACCGTTCATCAATTTCAGCTTACAGCTATGGGAGCTCTCGCTCTCGTACTCAATCTAACCGCATTTATACAGATGCTTCCCTGCAATCGAATTCAAGTGTAGAGAAAGGAGAGCAA...

CDS

Download CDS FASTA

1074 bp · TkA03G388700|TK1151|CDS

ATGTTCTTAATGCAAGGAGCAGTTCGTCCTTCTCCTTCTTCCCTGACCCGTTTCGCTCGTCTCACCCGCCACCTATCATTCTCAAACACCAACCGTTCATCAATTTCAGCTTACAGCTATGGGAGCTCTCGCTCTCGTACTCAATCTAACCGCATTTATACAGATGCTTCCCTGCAATCGAATTCAAGTGTAGAGAAAGGAGAGCAAAAATCTCTTGAGCAACCAGAAATCATATTCATTGGGACAGGAACTAGTGAAGG...

Protein

Download Protein FASTA

357 aa · TkA03G388700|TK1151|PROTEIN

MFLMQGAVRPSPSSLTRFARLTRHLSFSNTNRSSISAYSYGSSRSRTQSNRIYTDASLQSNSSVEKGEQKSLEQPEIIFIGTGTSEGIPRVSCLTHPLTKCPVCSKAVVVGNKNKRLNTSLLIRYPKPSGISNILIDAGKFFYQSALRWFPTYGIRSIDAVVITHSHADAIGGLDDLRDWTNNVQPYIPIYVAKRDFEVMKKTHYYLVDTSVIIPGAAVSELQFDIIDENPFIVNDLKFTPLPVWHGPNYRSLGFRFGNI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G388700`
TK1151 ID	TkA03G388700
OH-1004 ID	LXL04_008276
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G388700`
Location	Chr03:96252180-96256819 (-)
Description	Similar to SPCC777.06c: Putative hydrolase C777.06c (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_008276` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009249 protein lipoylation Biological Process GO:0019700 organic phosphonate catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0016787 hydrolase activity Molecular Function GO:0030145 manganese ion binding Molecular Function GO:0033819 lipoyl(octanoyl) transferase activity Molecular Function GO:0042803 protein homodimerization activity Molecular Function GO:0103043 phosphoribosyl 1,2-cyclic phosphate phosphodiesterase activity Molecular Function
KEGG gene cross-reference	ecj:JW4053 eco:b4092 ecoc:C3026_22120 pgi:PG_1343 spo:2538874 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.799

Rank 1 · TkA03G388700 · TK1151

Plastid0.144

Rank 2 · TkA03G388700 · TK1151

Cytoplasm0.082

Rank 3 · TkA03G388700 · TK1151

Nucleus0.058

Rank 4 · TkA03G388700 · TK1151

Peroxisome0.021

Rank 5 · TkA03G388700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16661Lactamase_B_651-88 aa

PF23023Anti-Pycsar_Apyc1118-304 aa

PF00753Lactamase_B132-193 aa

PF12706Lactamase_B_2133-319 aa

PF16661Lactamase_B_6133-191 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G388700	`PF16661`	Lactamase_B_6	51	88	0.084	12.9
TkA03G388700	`PF23023`	Anti-Pycsar_Apyc1	118	304	1.3e-08	35.6
TkA03G388700	`PF00753`	Lactamase_B	132	193	5.2e-08	33.8
TkA03G388700	`PF12706`	Lactamase_B_2	133	319	1.2e-24	87.7
TkA03G388700	`PF16661`	Lactamase_B_6	133	191	0.084	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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