TkA03G385860 | RubberDandelionOmics

Gene overview

TkA03G385860

Reference: TK1151 Chr: Chr03 Coordinates: 95475596-95476246 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

597 bp · TkA03G385860|TK1151|cDNA

ATGCATCAGGATCCATCAACGTACTCGCTGCCGATGGGTATGAACCCTCCGTTTCCAGAGAACGAGCATCTGAATTGCCCTAGATGCGAATCCAGCAACACCAAATTCTGCTATTACAATAACTACAATCTGTCACAGCCTCGCCATTATTGTAAGAACTGTCGACGTTATTGGACCAAAGGCGGAACTCTCCGGAACATCCCAATCGGTGGCGGTACTCGTAAACCCACTAAACGATCTTCAAACTCTAGTAAACATCC...

CDS

Download CDS FASTA

597 bp · TkA03G385860|TK1151|CDS

ATGCATCAGGATCCATCAACGTACTCGCTGCCGATGGGTATGAACCCTCCGTTTCCAGAGAACGAGCATCTGAATTGCCCTAGATGCGAATCCAGCAACACCAAATTCTGCTATTACAATAACTACAATCTGTCACAGCCTCGCCATTATTGTAAGAACTGTCGACGTTATTGGACCAAAGGCGGAACTCTCCGGAACATCCCAATCGGTGGCGGTACTCGTAAACCCACTAAACGATCTTCAAACTCTAGTAAACATCC...

Protein

Download Protein FASTA

198 aa · TkA03G385860|TK1151|PROTEIN

MHQDPSTYSLPMGMNPPFPENEHLNCPRCESSNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGTLRNIPIGGGTRKPTKRSSNSSKHPVSSSSPDSPVTTSPRPPAQLKPEPFPIFGSNQGAQFGGFVDGLRPNLGDEAREDGLIGTPVTEVFRKDYLSVDNDHNQSGSGGGRGESSGCDGGGNGWPNLSIFTPGSEFH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G385860`
TK1151 ID	TkA03G385860
OH-1004 ID	LXL04_008317
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.000
Protein coverage (%)	TK1151 97.475 / OH-1004 87.917 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G385860

Location Chr03:95475596-95476246 (-)

Description Similar to DOF1.7: Dof zinc finger protein DOF1.7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g51700`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g21270`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g50410`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g66940`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0726300`	Transcription factor that may transactivate seed storage protein genes in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008317 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045787 positive regulation of cell cycle Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G51700

ath:AT3G45610

ath:AT3G50410

ath:AT5G60850

ath:AT5G66940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.913

Rank 1 · TkA03G385860 · TK1151

Cytoplasm0.217

Rank 2 · TkA03G385860 · TK1151

Cell membrane0.025

Rank 3 · TkA03G385860 · TK1151

Mitochondrion0.021

Rank 4 · TkA03G385860 · TK1151

Endoplasmic reticulum0.015

Rank 5 · TkA03G385860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23451Zn_ribbon_PaaD20-55 aa

PF27511ComFA_N21-54 aa

PF02701Zn_ribbon_Dof22-78 aa

PF27208TP_021426-56 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G385860	`PF23451`	Zn_ribbon_PaaD	20	55	0.0021	18.4
TkA03G385860	`PF27511`	ComFA_N	21	54	2.4	9.3
TkA03G385860	`PF02701`	Zn_ribbon_Dof	22	78	7.9e-33	113.1
TkA03G385860	`PF27208`	TP_0214	26	56	0.42	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82155`	Arabidopsis thaliana	sp\|O82155\|DOF17_ARATH Dof zinc finger protein DOF1.7	79.400%	Swiss-Prot	Low
`Q94AR6`	Arabidopsis thaliana	sp\|Q94AR6\|DOF31_ARATH Dof zinc finger protein DOF3.1	65.900%	Swiss-Prot	Low
`Q39088`	Arabidopsis thaliana	sp\|Q39088\|DOF34_ARATH Dof zinc finger protein DOF3.4	62.800%	Swiss-Prot	Low
`Q9FGD6`	Arabidopsis thaliana	sp\|Q9FGD6\|DOF58_ARATH Dof zinc finger protein DOF5.8	56.700%	Swiss-Prot	Medium
`Q6Z345`	Oryza sativa subsp. japonica	sp\|Q6Z345\|DOF4_ORYSJ Dof zinc finger protein 4	76.900%	Swiss-Prot	Low

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