TkA03G370570 | RubberDandelionOmics

Gene overview

TkA03G370570

Reference: TK1151 Chr: Chr03 Coordinates: 91394050-91397609 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1697 bp · TkA03G370570|TK1151|cDNA

GGTAGGGCTATGATCAGTTTAATCCCATCTAATCTGATATGTATGATGACTAGAAAGCAAAACACACAAACCCTGAGAGCTTCTATCAAAGACTTGTTTCGGTGCTTAAACAAAGAAATTATTAAAGATTTTATGACAAAAGTTTTTTCTTTAAAGCAAAAGACACCCTTAAAGATGTTTTGTTTTTTTGTTTTTTTCAGACAAAGCATGAGTGTAATCTGTTATGGTTTTTCACTTCTAATCTTTAAGAGCTAAGAGAA...

CDS

Download CDS FASTA

1056 bp · TkA03G370570|TK1151|CDS

ATGATGGGAGAAAACCCTAGTTACTGGTGGAGCTTGAATGGGAGGCTGCAGCCACCGCCCTCTCAGCAGGTTTACCCTAATTTCTTATCAACACCACCGTTGCCGGTGGTGCCGCCAGTATCATCCACATCTTCCATCTTGAATCCTCCATATCTCTTTGGTTCTTCTTTACTACTTCCTACTTCAAACTCTAATACTTTGGCTGATCATCATCACCATGATAACCAAGATTTCCCAGTCTCATGGAGCCAATTACTTAT...

Protein

Download Protein FASTA

351 aa · TkA03G370570|TK1151|PROTEIN

MMGENPSYWWSLNGRLQPPPSQQVYPNFLSTPPLPVVPPVSSTSSILNPPYLFGSSLLLPTSNSNTLADHHHHDNQDFPVSWSQLLMTGLANDQDHNLGDGHVGEVKHGYLNQQICRQVYYGNKSDHHHENNNNEDNLQTCSSSWSSQLPPVPSVGSSSTINLSTTTMFDFSSKIDRQNQNANQYSSQYDDTSTSGASKKPRFQSSSTQPSTMSNDTFTSGTSKRTRAQHLSTQTPLKVRKEKLGDRISALHQLVSPFGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G370570`
TK1151 ID	TkA03G370570
OH-1004 ID	LXL04_008458
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G370570

Location Chr03:91394050-91397609 (-)

Description Similar to BHLH68: Transcription factor bHLH68

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20100`	Transcription factor bHLH133.	No verified direct reference in this release
`At4g29100`	Transcription factor bHLH68.	No verified direct reference in this release
`At1g27660`	Transcription factor bHLH110.	No verified direct reference in this release
`At3g19500`	Transcription factor bHLH113.	No verified direct reference in this release
`At3g20640`	Transcription factor bHLH123.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008458 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005634 nucleus Cellular Component

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G27660

ath:AT2G20100

ath:AT3G19500

ath:AT3G20640

ath:AT4G29100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980

Rank 1 · TkA03G370570 · TK1151

Cytoplasm0.078

Rank 2 · TkA03G370570 · TK1151

Cell membrane0.024

Rank 3 · TkA03G370570 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA03G370570 · TK1151

Plastid0.012

Rank 5 · TkA03G370570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04281Tom22211-267 aa

PF00010HLH240-278 aa

PF27761VUP_C313-327 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G370570	`PF04281`	Tom22	211	267	0.018	15.6
TkA03G370570	`PF00010`	HLH	240	278	0.045	14.3
TkA03G370570	`PF27761`	VUP_C	313	327	0.0014	18.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7XHI5`	Arabidopsis thaliana	sp\|Q7XHI5\|BH133_ARATH Transcription factor bHLH133	45.900%	Swiss-Prot	Low
`Q8S3D1`	Arabidopsis thaliana	sp\|Q8S3D1\|BH068_ARATH Transcription factor bHLH68	45.300%	Swiss-Prot	Low
`Q9SFZ3`	Arabidopsis thaliana	sp\|Q9SFZ3\|BH110_ARATH Transcription factor bHLH110	51.200%	Swiss-Prot	Low
`Q9LT67`	Arabidopsis thaliana	sp\|Q9LT67\|BH113_ARATH Transcription factor bHLH113	54.100%	Swiss-Prot	Low
`Q8GXT3`	Arabidopsis thaliana	sp\|Q8GXT3\|BH123_ARATH Transcription factor bHLH123	48.800%	Swiss-Prot	Low

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