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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G357590
Reference: TK1151 Chr: Chr03 Coordinates: 88202059-88214355 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

7270 bp · TkA03G357590|TK1151|cDNA

AATACACACAACATTTCGAAAGGAAAAAGGGCTAGGCTTTTGATCATGGGGGGTCGAACGGAAACCGAAGATATATAAACTTATAAACTACCTCCCGCTCCGTGTTGGTGTTCTTGGCCACTACTCTTTTGCTCTTCCAGGGTTTACGCTTGTTGTTCTTACTGTTATACATAATACATCGAACTAGGGTTACAAAATGCTTTTAGATTAGTACTCTTAATTATTAATTCTTACACTTGAAAAATGTCGAAGAAAGTGGT...

CDS

Download CDS FASTA

6636 bp · TkA03G357590|TK1151|CDS

ATGTCGAAGAAAGTGGTCACGAGAAAAGAGCTTTTGGACCGGTGGAGGGCCATTGAAGAAGAAGACGATGATGAAAACGCATTCGATGACTCAAAACAACGTCATATCCAACGTCTCAAGGAAACATGGTTCTCGGATGCATTCAACTTCTTGATATATCTCTCTAAAGAAAACCATATCTGGTGTGGCAACTGGGATATAATGGGGCCACTTTTAGAAACATTCTACAATTACTTCAAAGATGATCGGCCTGATTCTCC...

Protein

Download Protein FASTA

2211 aa · TkA03G357590|TK1151|PROTEIN

MSKKVVTRKELLDRWRAIEEEDDDENAFDDSKQRHIQRLKETWFSDAFNFLIYLSKENHIWCGNWDIMGPLLETFYNYFKDDRPDSPLKLLWKRISEELQDCMQCICQHHQAKDTYAMEYELSSIGPLLDVLCRLDEERVTNQLKEMNSRISGGKYDPVKDSAKVITVMYEVLMFPVLLDDQSLVNEFQIFIEAVDDSHELTLAGHQQYPGVYALLFLKTRRCRSIGFRLAGYMGKLRNAADLEPLQPLLKKCISFLEAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G357590
TK1151 IDTkA03G357590
OH-1004 IDLXL04_008577
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 97.874 / OH-1004 97.476
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G357590
LocationChr03:88202059-88214355 (+)
DescriptionSimilar to SEN1: Helicase SEN1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15570 Probable helicase that may regulate RNA molecules involved in nucleolar organization and pollen tube guidance.
Attractive and repulsive interactions between female and male gametophytes in Arabidopsis pollen tube guidance.2000 · DOI: 10.1242/dev.127.20.4511
MAA3 (MAGATAMA3) helicase gene is required for female gametophyte development and pollen tube guidance in Arabidopsis thaliana.2008 · DOI: 10.1093/pcp/pcn130

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008577 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006283 transcription-coupled nucleotide-excision repair Biological Process
GO:0006353 DNA-templated transcription termination Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006364 rRNA processing Biological Process
GO:0006369 termination of RNA polymerase II transcription Biological Process
GO:0006386 termination of RNA polymerase III transcription Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006399 tRNA metabolic process Biological Process
GO:0006974 DNA damage response Biological Process
GO:0008033 tRNA processing Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009875 pollen-pistil interaction Biological Process
KEGG gene cross-reference
ath:AT4G15570
sce:YLR430W
spo:2540523
spo:2541556
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.846
Rank 1 · TkA03G357590 · TK1151
Cytoplasm0.152
Rank 2 · TkA03G357590 · TK1151
Cell membrane0.046
Rank 3 · TkA03G357590 · TK1151
Endoplasmic reticulum0.034
Rank 4 · TkA03G357590 · TK1151
Mitochondrion0.024
Rank 5 · TkA03G357590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20073DUF646924-61 aa
PF13713BRX_N140-157 aa
PF04851ResIII146-202 aa
PF02562PhoH365-403 aa
PF13087AAA_12378-420 aa
PF20073DUF64691171-1212 aa
PF23576SEN1_barrel1218-1324 aa
PF01443Viral_helicase11233-1264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G357590PF20073DUF646924610.1112.7
TkA03G357590PF13713BRX_N1401570.05613.8
TkA03G357590PF04851ResIII1462020.04314.4
TkA03G357590PF02562PhoH3654030.1712.1
TkA03G357590PF13087AAA_123784204.7e-61206.5
TkA03G357590PF20073DUF6469117112120.1112.7
TkA03G357590PF23576SEN1_barrel121813243.7e-1659.7
TkA03G357590PF01443Viral_helicase1123312640.0002321.8
TkA03G357590PF13713BRX_N132513330.05613.8
TkA03G357590PF04851ResIII137714280.04314.4
TkA03G357590PF13086AAA_11137817371.4e-57196.2
TkA03G357590PF13604AAA_30137914261.6e-0732.0
TkA03G357590PF02562PhoH140014300.1712.1
TkA03G357590PF13245AAA_19140117336e-0730.4
TkA03G357590PF13401AAA_22140214320.1812.8
TkA03G357590PF00580UvrD-helicase140514327e-0626.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B6SFA4Arabidopsis thalianasp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 329.200%Swiss-ProtLow

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