TkA03G351710 | RubberDandelionOmics

Gene overview

TkA03G351710

Reference: TK1151 Chr: Chr03 Coordinates: 86627841-86629997 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1022 bp · TkA03G351710|TK1151|cDNA

AAAGAAAGGAGATTTTGTCAAACTATGATTGGGTCCAGACACGTGGGTTTTCGCTGTGGCGCATCGAGACATACTCCGTACGAATAGCTTCAGCCTTTCACCCTCAACTCTACTAACGACAATTTTATAACACACAAGGTTAAGAGTTTCCACTCGTCAAATCAAATCCGAGTAACAATGTCGATGCTTCGATTCTGCAATCAAATTAGGAAAAATGCTCCTCATTCCTTAAGATTCTCCAGGCTCATTAATTCACTGCA...

CDS

Download CDS FASTA

564 bp · TkA03G351710|TK1151|CDS

ATGGCCTCCACAACCCATTCAAATCCCCAGAGAGATATCTATTATATGGAGACGTATCTGCAAAAGCAGGCCATCTTCTTGCCACGCCTGAGGTTTCTGATTTTTTTACTAATTAGTACAAAGGGTCTCACCAAAGAGGTTACCAGCAGGCTTATGCTGAAGTTTATGTTACAGCCAAGTTCCTACAGAACTTTTCCAGTGATCAAGTACGTTTCTGGCAAGATCTTTTGGGGTACCTGGGAATCATCTTGGTCAACAAA...

Protein

Download Protein FASTA

187 aa · TkA03G351710|TK1151|PROTEIN

MASTTHSNPQRDIYYMETYLQKQAIFLPRLRFLIFLLISTKGLTKEVTSRLMLKFMLQPSSYRTFPVIKYVSGKIFWGTWESSWSTKSWFPLPYGAVALITPFNFPLEIPVLQLMEHCIWETSLSLKSDSKVCIVMEQMLRLLHACGMPMEDVDFINSDGGTMNKLLLEVSFSHLFSILYNQKPLST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G351710`
TK1151 ID	TkA03G351710
OH-1004 ID	LXL04_031365
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	75.000
Protein coverage (%)	TK1151 42.781 / OH-1004 14.414 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G351710

Location Chr03:86627841-86629997 (-)

Description Similar to ALDH12A1: Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62530`	Plays a role in the inhibition of programmed cell death by converting the toxic proline catabolism intermediate (s)-1-pyrroline-5- carboxylate (P5C) to glutamate.	A nuclear gene encoding mitochondrial Delta-pyrroline-5-carboxylate dehydrogenase and its potential role in protection from proline toxicity.2001 · DOI: 10.1046/j.1365-313x.2001.01101.x Unraveling delta1-pyrroline-5-carboxylate-proline cycle in plants by uncoupled expression of proline oxidation enzymes.2009 · DOI: 10.1074/jbc.m109.009340 P5CDH affects the pathways contributing to Pro synthesis after ProDH activation by biotic and abiotic stress conditions.2015 · DOI: 10.3389/fpls.2015.00572

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031365 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006081 aldehyde metabolic process Biological Process

GO:0006560 proline metabolic process Biological Process

GO:0009450 gamma-aminobutyric acid catabolic process Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010133 L-proline catabolic process to L-glutamate Biological Process

GO:0019568 arabinose catabolic process Biological Process

GO:0042843 D-xylose catabolic process Biological Process

GO:0048316 seed development Biological Process

GO:0072593 reactive oxygen species metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT5G62530

bsu:BSU03910

hvo:HVO_B0039

sso:SSO3117

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.313

Rank 1 · TkA03G351710 · TK1151

Mitochondrion0.252

Rank 2 · TkA03G351710 · TK1151

Nucleus0.210

Rank 3 · TkA03G351710 · TK1151

Endoplasmic reticulum0.110

Rank 4 · TkA03G351710 · TK1151

Peroxisome0.071

Rank 5 · TkA03G351710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00171Aldedh92-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G351710	`PF00171`	Aldedh	92	169	4.3e-08	32.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZC3`	Arabidopsis thaliana	sp\|Q8VZC3\|AL121_ARATH Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial	68.400%	Swiss-Prot	Low

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