TkA03G295810 | RubberDandelionOmics

Gene overview

TkA03G295810

Reference: TK1151 Chr: Chr03 Coordinates: 72900786-72904484 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1257 bp · TkA03G295810|TK1151|cDNA

ATGGCTCTTACCGCACATTTTATCGATAACAATTGGAACTTGAAAAAAAAAGTCTTGAATTTTTGTCTACTTGATGGTCATCGGGGTGTTGATATTGGAAAAGGAGTAGAGGCATGTTGGAACGAGTGGGAAATTGACAATGTTTTGACACTTTCGGTTGATAACGCGAGTGCAAATGATAGTGCAATCGATTTTCTAAAAATAATATTTGCATATAATCAAAATTCCTTATTGCATGGAAAATGGTTTGACATCAGATG...

CDS

Download CDS FASTA

1257 bp · TkA03G295810|TK1151|CDS

ATGGCTCTTACCGCACATTTTATCGATAACAATTGGAACTTGAAAAAAAAAGTCTTGAATTTTTGTCTACTTGATGGTCATCGGGGTGTTGATATTGGAAAAGGAGTAGAGGCATGTTGGAACGAGTGGGAAATTGACAATGTTTTGACACTTTCGGTTGATAACGCGAGTGCAAATGATAGTGCAATCGATTTTCTAAAAATAATATTTGCATATAATCAAAATTCCTTATTGCATGGAAAATGGTTTGACATCAGATG...

Protein

Download Protein FASTA

418 aa · TkA03G295810|TK1151|PROTEIN

MALTAHFIDNNWNLKKKVLNFCLLDGHRGVDIGKGVEACWNEWEIDNVLTLSVDNASANDSAIDFLKIIFAYNQNSLLHGKWFDIRCAAHIINLVVQDGMKKVDKSIDNIRCAVKWVKKTGARIATFTNCAENAKCDSRKLLVLDVSTRWNSTYHMLEIAQAYEHAFVFDDITTRISGTKYVTSHTLVVELAKIRDTMRQQVNCDILEEQPTDQHLYDIAKVNSPRFPILSLMAKDLLAIPISTVASESVFSTSGRVLDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G295810`
TK1151 ID	TkA03G295810
OH-1004 ID	LXL04_033605
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	48.400
Protein coverage (%)	TK1151 52.632 / OH-1004 64.444 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G295810

Location Chr03:72900786-72904484 (-)

Description Similar to Os03g0733400: Zinc finger BED domain-containing protein RICESLEEPER 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0733400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0583200`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0239150`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033605 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

dosa:Os03g0733400

dosa:Os05g0239150

dosa:Os05g0583200

osa:4339741

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.730

Rank 1 · TkA03G295810 · TK1151

Cytoplasm0.281

Rank 2 · TkA03G295810 · TK1151

Mitochondrion0.032

Rank 3 · TkA03G295810 · TK1151

Extracellular0.024

Rank 4 · TkA03G295810 · TK1151

Cell membrane0.021

Rank 5 · TkA03G295810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27041ZBED1_RNase-like1-80 aa

PF27039ZBED1_RNase-like_helical85-168 aa

PF05699Dimer_Tnp_hAT205-280 aa

PF03179V-ATPase_G354-413 aa

PF27039ZBED1_RNase-like_helical358-364 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G295810	`PF27041`	ZBED1_RNase-like	1	80	2.4e-15	57.2
TkA03G295810	`PF27039`	ZBED1_RNase-like_helical	85	168	6.6e-25	88.0
TkA03G295810	`PF05699`	Dimer_Tnp_hAT	205	280	2.1e-22	79.4
TkA03G295810	`PF03179`	V-ATPase_G	354	413	0.036	15.3
TkA03G295810	`PF27039`	ZBED1_RNase-like_helical	358	364	6.6e-25	88.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6AVI0`	Oryza sativa subsp. japonica	sp\|Q6AVI0\|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2	54.700%	Swiss-Prot	Low
`Q75HY5`	Oryza sativa subsp. japonica	sp\|Q75HY5\|RSLE3_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 3	53.800%	Swiss-Prot	Low
`B9FJG3`	Oryza sativa subsp. japonica	sp\|B9FJG3\|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1	51.600%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card