How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

TkA03G276020
Reference: TK1151 Chr: Chr03 Coordinates: 68144242-68144622 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

336 bp · TkA03G276020|TK1151|cDNA

TCGATTTCCCCTCCCGCTCACTGCGACTCGCCGACTCTGCGAGACCTCCCCCGTCGTCGTTGTCTTTACTCTTCACGTCGTATACCGGCGCTGCCTTTCCCCGTCGTTGGTTCGATCCGACCGACTCCGTCTCCACTCTCTACCACAGCTTCTTCACTTCTTCAGTCTTCAGTTCTTCACTACCGTTCGCCTACCACCATAGCTTCTTCAGACTTCGAGTTTATGGCTTCTAACACGATGGTAAGTCTTGATTTCTGCTT...

336 bp · TkA03G276020|TK1151|CDS

TCGATTTCCCCTCCCGCTCACTGCGACTCGCCGACTCTGCGAGACCTCCCCCGTCGTCGTTGTCTTTACTCTTCACGTCGTATACCGGCGCTGCCTTTCCCCGTCGTTGGTTCGATCCGACCGACTCCGTCTCCACTCTCTACCACAGCTTCTTCACTTCTTCAGTCTTCAGTTCTTCACTACCGTTCGCCTACCACCATAGCTTCTTCAGACTTCGAGTTTATGGCTTCTAACACGATGGTAAGTCTTGATTTCTGCTT...

111 aa · TkA03G276020|TK1151|PROTEIN

SISPPAHCDSPTLRDLPRRRCLYSSRRIPALPFPVVGSIRPTPSPLSTTASSLLQSSVLHYRSPTTIASSDFEFMASNTMVSLDFCFPVSISAALVFCFPISPSLFRCLIK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G276020
TK1151 IDTkA03G276020
OH-1004 IDLXL04_038368
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)55.300
Protein coverage (%)TK1151 65.766 / OH-1004 60.550
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G276020
LocationChr03:68144242-68144622 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038368 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.499
Rank 1 · TkA03G276020 · TK1151
Cytoplasm0.442
Rank 2 · TkA03G276020 · TK1151
Cell membrane0.116
Rank 3 · TkA03G276020 · TK1151
Endoplasmic reticulum0.104
Rank 4 · TkA03G276020 · TK1151
Plastid0.032
Rank 5 · TkA03G276020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser