TkA03G271160 | RubberDandelionOmics

Gene overview

TkA03G271160

Reference: TK1151 Chr: Chr03 Coordinates: 67038905-67041060 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1893 bp · TkA03G271160|TK1151|cDNA

TTTAAGGAAACTTCCACTTTGAAGAAAAGGGGTAGTTCTTCAGCTACCGGGGGCTCTTCGACTCCTGATAGTGAGAAGGGGTCTCCTGTGCTCGAGGAGAAAGATACATCGGTTATCAAACGACGTCGGCTCTTTCGTGGAGGCAACCACCCCGGTAAGAATTCTGATCCTACTTGTGTGTCTGACTTGTCTGTTTCGGATTCAGCACCAACGAGCGCACCTATTAGCTTGGCTGTAGATCTTTTTGAGTGTCATGTGTC...

CDS

Download CDS FASTA

1893 bp · TkA03G271160|TK1151|CDS

TTTAAGGAAACTTCCACTTTGAAGAAAAGGGGTAGTTCTTCAGCTACCGGGGGCTCTTCGACTCCTGATAGTGAGAAGGGGTCTCCTGTGCTCGAGGAGAAAGATACATCGGTTATCAAACGACGTCGGCTCTTTCGTGGAGGCAACCACCCCGGTAAGAATTCTGATCCTACTTGTGTGTCTGACTTGTCTGTTTCGGATTCAGCACCAACGAGCGCACCTATTAGCTTGGCTGTAGATCTTTTTGAGTGTCATGTGTC...

Protein

Download Protein FASTA

630 aa · TkA03G271160|TK1151|PROTEIN

FKETSTLKKRGSSSATGGSSTPDSEKGSPVLEEKDTSVIKRRRLFRGGNHPGKNSDPTCVSDLSVSDSAPTSAPISLAVDLFECHVSTDPLLADAVIASEDSTAPVVDFPSSGLSSDASLVSSIKAISSPVSEKVSVTKSTVSPSPLTKPMVTKKSMSAFHQTLLGASLGFSKFAKASVSSSEAVVVSDKQLGTSSEGIQTPLAAAQPADAILSIPSLPSSPEDVTKTALVTASLEAIALGNEASRPTLVSLSAALPAFM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G271160`
TK1151 ID	TkA03G271160
OH-1004 ID	LXL04_007272
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	64.400
Protein coverage (%)	TK1151 99.841 / OH-1004 65.067 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G271160`
Location	Chr03:67038905-67041060 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007272` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.891

Rank 1 · TkA03G271160 · TK1151

Cytoplasm0.209

Rank 2 · TkA03G271160 · TK1151

Mitochondrion0.024

Rank 3 · TkA03G271160 · TK1151

Cell membrane0.017

Rank 4 · TkA03G271160 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA03G271160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07889DUF1664151-163 aa

PF09351DUF1993299-409 aa

PF28417SKA3_helical308-346 aa

PF14992TMCO5334-461 aa

PF13476AAA_23335-415 aa

PF07889DUF1664339-389 aa

PF28417SKA3_helical367-386 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G271160	`PF07889`	DUF1664	151	163	4.3	8.1
TkA03G271160	`PF09351`	DUF1993	299	409	6.6	7.4
TkA03G271160	`PF28417`	SKA3_helical	308	346	0.57	11.1
TkA03G271160	`PF14992`	TMCO5	334	461	0.095	12.7
TkA03G271160	`PF13476`	AAA_23	335	415	4.7	8.5
TkA03G271160	`PF07889`	DUF1664	339	389	4.3	8.1
TkA03G271160	`PF28417`	SKA3_helical	367	386	0.57	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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