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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G267890
Reference: TK1151 Chr: Chr03 Coordinates: 66333544-66337089 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2491 bp · TkA03G267890|TK1151|cDNA

TTATAAAGGATGCATAGAAAATTGCTACAGCCTAAACTCTAAAGGTGCCCAAATGGATCCCACATTGCCTCTTATAACAAACAAATGAGAGGCTGGTTCATTAATCGCTCGAGTGGTTCCGCTTTCAAAATCATGATCATGACAGCCATCATCAAAATCCCTTTATCCTTCAAAACCCTTCCATTTCTTATTCTGTTGATTCTTCATCAATCTTTTGGACTCACCACTGATGGCATTCGTTTATTATCTTTCAAATACTC...

CDS

Download CDS FASTA

2367 bp · TkA03G267890|TK1151|CDS

ATGAGAGGCTGGTTCATTAATCGCTCGAGTGGTTCCGCTTTCAAAATCATGATCATGACAGCCATCATCAAAATCCCTTTATCCTTCAAAACCCTTCCATTTCTTATTCTGTTGATTCTTCATCAATCTTTTGGACTCACCACTGATGGCATTCGTTTATTATCTTTCAAATACTCTGTTTTAAGCGATCCTTTAGGTGTTCTAGACTCATGGAGCTACACGGACGACACTCCATGTTCATGGCACGGTGTCGTCTGTGA...

Protein

Download Protein FASTA

788 aa · TkA03G267890|TK1151|PROTEIN

MRGWFINRSSGSAFKIMIMTAIIKIPLSFKTLPFLILLILHQSFGLTTDGIRLLSFKYSVLSDPLGVLDSWSYTDDTPCSWHGVVCENRCVTGLSLPSSSLTVTIPANLGSIPHLREVNLSNNSISGSIPLSLYNAPELETLDLSNNLMSGEFEFVGGWRSLRYLNMSGNSLTGKLPQNLAALKNLTVVSLTGNRISGDLPSGFESVEVLDLSGNSINGSLPEKFGSGELVYFNISHNNISGEIPKEFANKVPITATIDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G267890
TK1151 IDTkA03G267890
OH-1004 IDLXL04_008045
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G267890
LocationChr03:66333544-66337089 (-)
DescriptionSimilar to At4g37250: Probable LRR receptor-like serine/threonine-protein kinase At4g37250
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37250 Probable LRR receptor-like serine/threonine-protein kinase At4g37250. No verified direct reference in this release
At4g34220 Receptor protein kinase-like protein At4g34220. No verified direct reference in this release
At2g01210 Receptor protein kinase acting as an integrator for intracellular calcium and heterotrimeric G protein signaling with extracellular signals during early zygote development. No verified direct reference in this release
At1g66830 Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830. No verified direct reference in this release
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008045 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010030 positive regulation of seed germination Biological Process
GO:0010069 zygote asymmetric cytokinesis in embryo sac Biological Process
GO:0010070 zygote asymmetric cell division Biological Process
GO:0042631 cellular response to water deprivation Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G48480
ath:AT1G66830
ath:AT2G01210
ath:AT4G34220
ath:AT4G37250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.871
Rank 1 · TkA03G267890 · TK1151
Endoplasmic reticulum0.076
Rank 2 · TkA03G267890 · TK1151
Cytoplasm0.071
Rank 3 · TkA03G267890 · TK1151
Nucleus0.058
Rank 4 · TkA03G267890 · TK1151
Lysosome / Vacuole0.021
Rank 5 · TkA03G267890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_248-86 aa
PF00560LRR_194-111 aa
PF13855LRR_894-148 aa
PF24141LRR_ComC97-134 aa
PF23211LRR_LRWD198-147 aa
PF24048LRR_NXF1-5110-178 aa
PF29460LRR_NXF2112-185 aa
PF12799LRR_4113-147 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G267890PF08263LRRNT_248862.1e-1041.4
TkA03G267890PF00560LRR_1941114e-2274.2
TkA03G267890PF13855LRR_8941481.5e-1660.6
TkA03G267890PF24141LRR_ComC971340.03614.5
TkA03G267890PF23211LRR_LRWD1981470.008416.6
TkA03G267890PF24048LRR_NXF1-51101780.01615.6
TkA03G267890PF29460LRR_NXF21121850.05813.9
TkA03G267890PF12799LRR_41131477.7e-1761.7
TkA03G267890PF13516LRR_61131279.8e-0935.3
TkA03G267890PF00560LRR_11141354e-2274.2
TkA03G267890PF23598LRR_141142061.6e-0524.5
TkA03G267890PF24141LRR_ComC1312310.03614.5
TkA03G267890PF00560LRR_11391524e-2274.2
TkA03G267890PF13516LRR_61391479.8e-0935.3
TkA03G267890PF23211LRR_LRWD11552160.008416.6
TkA03G267890PF13855LRR_81571961.5e-1660.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGS3Arabidopsis thalianasp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g3725052.200%Swiss-ProtHigh
Q94C77Arabidopsis thalianasp|Q94C77|RPKL_ARATH Receptor protein kinase-like protein At4g3422046.100%Swiss-ProtMedium
Q9ZU46Arabidopsis thalianasp|Q9ZU46|ZAR1_ARATH Receptor protein kinase-like protein ZAR142.500%Swiss-ProtMedium
Q9C9N5Arabidopsis thalianasp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g6683038.000%Swiss-ProtMedium
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673034.200%Swiss-ProtLow

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