TkA03G260260 | RubberDandelionOmics

Gene overview

TkA03G260260

Reference: TK1151 Chr: Chr03 Coordinates: 64568104-64572128 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

903 bp · TkA03G260260|TK1151|cDNA

ATGGAAGATAATCCAACAGCTATGATTACATCAGGAGGAACACAATTAGGTATTCACCCATCGCCACTTGTGGCAACATTCAGCTCCAGGGGCCCAAATCCGGTCACACCGGAAATACTCAAACCCGATTTCATAGCACCAGGAGTAAATATTCTAGCAGGTTGGACCATTAATGGAAGTCCGACTGGCTTAATCGAAGATCCTCTGCATGTGAATTTGATTATTATGTCTGGAACATCAGTCTCGTGTTCACATGTAAG...

CDS

Download CDS FASTA

903 bp · TkA03G260260|TK1151|CDS

ATGGAAGATAATCCAACAGCTATGATTACATCAGGAGGAACACAATTAGGTATTCACCCATCGCCACTTGTGGCAACATTCAGCTCCAGGGGCCCAAATCCGGTCACACCGGAAATACTCAAACCCGATTTCATAGCACCAGGAGTAAATATTCTAGCAGGTTGGACCATTAATGGAAGTCCGACTGGCTTAATCGAAGATCCTCTGCATGTGAATTTGATTATTATGTCTGGAACATCAGTCTCGTGTTCACATGTAAG...

Protein

Download Protein FASTA

300 aa · TkA03G260260|TK1151|PROTEIN

MEDNPTAMITSGGTQLGIHPSPLVATFSSRGPNPVTPEILKPDFIAPGVNILAGWTINGSPTGLIEDPLHVNLIIMSGTSVSCSHVSGLAALLKAAHPEWSPAAIRSSFMPTAYSTYKNGDELEDDATRTRSTSFDHGSDHVDPVSALDPGLVYDASVDDYLSFLCALNYSSGSIKKFASGNFKCTVGKKYRVEDLNYPSFTVPLINSNGSNSPIMVKYTRSLTNVGTPATYKVSISSSVRDVKITVEPDELTFVKKGER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G260260`
TK1151 ID	TkA03G260260
OH-1004 ID	LXL04_008016
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.300
Protein coverage (%)	TK1151 100.000 / OH-1004 42.180 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G260260

Location Chr03:64568104-64572128 (-)

Description Similar to SBT1.7: Subtilisin-like protease SBT1.7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67360`	Serine protease.	Ara12 subtilisin-like protease from Arabidopsis thaliana: purification, substrate specificity and tissue localization.2003 · DOI: 10.1042/bj20021125 A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats.2008 · DOI: 10.1111/j.1365-313x.2008.03437.x
`At2g05920`	Subtilisin-like protease SBT1.8.	No verified direct reference in this release
`At3g14067`	Subtilisin-like protease SBT1.4.	No verified direct reference in this release
`At3g14240`	Subtilisin-like protease SBT1.5.	No verified direct reference in this release
`At4g34980`	Subtilisin-like protease SBT1.6.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008016 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010214 seed coat development Biological Process

GO:0010223 secondary shoot formation Biological Process

GO:0048731 system development Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT2G05920

ath:AT3G14067

ath:AT3G14240

ath:AT5G51750

ath:AT5G67360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.813

Rank 1 · TkA03G260260 · TK1151

Cell membrane0.067

Rank 2 · TkA03G260260 · TK1151

Cytoplasm0.046

Rank 3 · TkA03G260260 · TK1151

Lysosome / Vacuole0.040

Rank 4 · TkA03G260260 · TK1151

Endoplasmic reticulum0.037

Rank 5 · TkA03G260260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00082Peptidase_S820-121 aa

PF00082Peptidase_S8171-233 aa

PF17766fn3_6195-296 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G260260	`PF00082`	Peptidase_S8	20	121	7.9e-17	62.2
TkA03G260260	`PF00082`	Peptidase_S8	171	233	7.9e-17	62.2
TkA03G260260	`PF17766`	fn3_6	195	296	1.2e-24	87.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65351`	Arabidopsis thaliana	sp\|O65351\|SBT17_ARATH Subtilisin-like protease SBT1.7	56.200%	Swiss-Prot	High
`Q9ZUF6`	Arabidopsis thaliana	sp\|Q9ZUF6\|SBT18_ARATH Subtilisin-like protease SBT1.8	48.500%	Swiss-Prot	Medium
`Q9LVJ1`	Arabidopsis thaliana	sp\|Q9LVJ1\|SBT14_ARATH Subtilisin-like protease SBT1.4	48.700%	Swiss-Prot	Medium
`Q9LUM3`	Arabidopsis thaliana	sp\|Q9LUM3\|SBT15_ARATH Subtilisin-like protease SBT1.5	44.500%	Swiss-Prot	Medium
`O49607`	Arabidopsis thaliana	sp\|O49607\|SBT16_ARATH Subtilisin-like protease SBT1.6	44.700%	Swiss-Prot	Medium

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