TkA03G216680 | RubberDandelionOmics

Gene overview

TkA03G216680

Reference: TK1151 Chr: Chr03 Coordinates: 54295912-54304017 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

909 bp · TkA03G216680|TK1151|cDNA

TAACGACAATTGTGCTTTTTTTATTCTTTTAAAAAAATTACACTTGAATGACTAAAACAGATAATCCAAAATAAAAACTATCCCATCCAATCCTCACTCCCATCCCATATTCTTCCCCTTCCATATGTCCTTCTCTCAATATATGAAAGAATTTACATTCACAACTATCTCTCCAAATATGAAACCTTTGCTACTACCGACACCGCCTCTAACCAACACTATTACCTCTGAAATCACCCATCTTATTAATCTGAAAAATG...

CDS

Download CDS FASTA

597 bp · TkA03G216680|TK1151|CDS

ATGTCCTTCTCTCAATATATGAAAGAATTTACATTCACAACTATCTCTCCAAATATGAAACCTTTGCTACTACCGACACCGCCTCTAACCAACACTATTACCTCTGAAATCACCCATCTTATTAATCTGAAAAATGGATATACAAACAAGGTGAAAACCCTAGTTCTGACAAAAATGAAAACGACTCTGAAAAGCCAAGATGCTTCACCGCCTCCCTCTCCCCATATGTCAACCTACAACCACTACCACCAACCTCTGGA...

Protein

Download Protein FASTA

198 aa · TkA03G216680|TK1151|PROTEIN

MSFSQYMKEFTFTTISPNMKPLLLPTPPLTNTITSEITHLINLKNGYTNKVKTLVLTKMKTTLKSQDASPPPSPHMSTYNHYHQPLESKMEVNMLKNEIDVLQKGLRYMFEGGAGKMTLDELRILESNLEVWMYHIRSAKMDIMAQEIQLLKNKEGILKAANKCLQEQMEMQFGAVNNDPTMANIPYPLTIQNEIYQC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G216680`
TK1151 ID	TkA03G216680
OH-1004 ID	LXL04_007823
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G216680

Location Chr03:54295912-54304017 (-)

Description Similar to MADS33: MADS-box transcription factor 33

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71692`	Probable transcription activator that regulates root development by controlling cell proliferation in root meristem.	An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis.2008 · DOI: 10.1104/pp.107.108647

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YQK9`	Probable transcription factor.	No verified direct reference in this release
`Os08g0112700`	Probable transcription factor.	No verified direct reference in this release
`Os12g0206800`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007823 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G71692

dosa:Os07g0605200

dosa:Os08g0112700

dosa:Os12g0206800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.853

Rank 1 · TkA03G216680 · TK1151

Cytoplasm0.232

Rank 2 · TkA03G216680 · TK1151

Cell membrane0.035

Rank 3 · TkA03G216680 · TK1151

Endoplasmic reticulum0.024

Rank 4 · TkA03G216680 · TK1151

Mitochondrion0.018

Rank 5 · TkA03G216680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01486K-box86-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G216680	`PF01486`	K-box	86	169	1.3e-19	70.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38841`	Arabidopsis thaliana	sp\|Q38841\|AGL12_ARATH Agamous-like MADS-box protein AGL12	52.200%	Swiss-Prot	Medium
`A2YQK9`	Oryza sativa subsp. indica	sp\|A2YQK9\|MAD26_ORYSI MADS-box transcription factor 26	46.200%	Swiss-Prot	Medium
`Q0J8G8`	Oryza sativa subsp. japonica	sp\|Q0J8G8\|MAD26_ORYSJ MADS-box transcription factor 26	46.200%	Swiss-Prot	Medium
`Q2QW55`	Oryza sativa subsp. japonica	sp\|Q2QW55\|MAD33_ORYSJ MADS-box transcription factor 33	59.500%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card