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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G203410
Reference: TK1151 Chr: Chr03 Coordinates: 51090844-51091782 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

642 bp · TkA03G203410|TK1151|cDNA

ATGTCTATTGTCTTTTCTCACCCTAAATCACTCGAAATTCTGCTTCCACCAGACATTTTTAAAGCCCGCAGCCTAAACTGCCACATTCTGAATCCTTTTTGCCATCGAATAAAAGACAAAGCGGATTATGCAAAGAGAGTGATGTGCTTAGCTAATGCAATTGACAGGTTGCCGATTTCAGATAGCCAGACTGATGATACAACAGGCGAGGAGCTCTCACCTGAGTTGTCGAATAGGTATATACGGGGCTTATGTAAGGC...

CDS

Download CDS FASTA

642 bp · TkA03G203410|TK1151|CDS

ATGTCTATTGTCTTTTCTCACCCTAAATCACTCGAAATTCTGCTTCCACCAGACATTTTTAAAGCCCGCAGCCTAAACTGCCACATTCTGAATCCTTTTTGCCATCGAATAAAAGACAAAGCGGATTATGCAAAGAGAGTGATGTGCTTAGCTAATGCAATTGACAGGTTGCCGATTTCAGATAGCCAGACTGATGATACAACAGGCGAGGAGCTCTCACCTGAGTTGTCGAATAGGTATATACGGGGCTTATGTAAGGC...

Protein

Download Protein FASTA

213 aa · TkA03G203410|TK1151|PROTEIN

MSIVFSHPKSLEILLPPDIFKARSLNCHILNPFCHRIKDKADYAKRVMCLANAIDRLPISDSQTDDTTGEELSPELSNRYIRGLCKAGNIDRAMVYLSQMEALCGLCEQTVKVLQLMEHEGMEPNLIMLNVLINAFGIAGRHLEALSVYHHINESGVSPDVVTYTTLMKALLRAKEFKKVPVIYKDMETAGCSPDRKARELLQTAMMVLERRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G203410
TK1151 IDTkA03G203410
OH-1004 IDLXL04_007669
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G203410
LocationChr03:51090844-51091782 (+)
DescriptionSimilar to At5g36300: Putative pentatricopeptide repeat-containing protein At5g36300
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g36300 Putative pentatricopeptide repeat-containing protein At5g36300. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007669 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0042651 thylakoid membrane Cellular Component
GO:0003727 single-stranded RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G36300
ath:AT5G42310
dosa:Os07g0548300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.820
Rank 1 · TkA03G203410 · TK1151
Mitochondrion0.135
Rank 2 · TkA03G203410 · TK1151
Nucleus0.041
Rank 3 · TkA03G203410 · TK1151
Cytoplasm0.019
Rank 4 · TkA03G203410 · TK1151
Cell membrane0.010
Rank 5 · TkA03G203410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N69-98 aa
PF13041PPR_278-101 aa
PF01535PPR81-101 aa
PF12854PPR_181-101 aa
PF13812PPR_382-101 aa
PF23276TPR_2483-101 aa
PF29070MSC6_N103-183 aa
PF01535PPR104-121 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G203410PF29070MSC6_N69980.0003820.4
TkA03G203410PF13041PPR_2781012e-2382.9
TkA03G203410PF01535PPR811015.1e-1658.4
TkA03G203410PF12854PPR_1811011.8e-1557.1
TkA03G203410PF13812PPR_3821012.3e-1350.7
TkA03G203410PF23276TPR_24831013.7e-0834.1
TkA03G203410PF29070MSC6_N1031830.0003820.4
TkA03G203410PF01535PPR1041215.1e-1658.4
TkA03G203410PF13041PPR_21081362e-2382.9
TkA03G203410PF17177PPR_long1081960.001618.6
TkA03G203410PF06239ECSIT_N1091400.1612.0
TkA03G203410PF23276TPR_241101753.7e-0834.1
TkA03G203410PF13812PPR_31111372.3e-1350.7
TkA03G203410PF12854PPR_11211481.8e-1557.1
TkA03G203410PF13041PPR_21241722e-2382.9
TkA03G203410PF01535PPR1281575.1e-1658.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFZ2Arabidopsis thalianasp|Q9FFZ2|PP402_ARATH Putative pentatricopeptide repeat-containing protein At5g3630052.300%Swiss-ProtLow

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