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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G189340
Reference: TK1151 Chr: Chr03 Coordinates: 47662810-47666175 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2216 bp · TkA03G189340|TK1151|cDNA

TCACAGTGTCACACAATTTTCAATCGTTCACCTTCACCATCGGGCATTCGGGCTTCATCTCCATCGCCGGCCACCGGCGCCACACCCCGTCTCTCTCCGGCCACCAGCGCCACACCGCACCGCTCACCGCCCACCAACGCCTTCACCGTCGGGCATCAGCGCCGACGCACGCAGAGAAGAAAACAGTTATAGTTTGGTATTGGGTCTGTGCAACATATCTTACTAATATCGACGAAACTCTCTCCACGACCGCATTAGGG...

CDS

Download CDS FASTA

1647 bp · TkA03G189340|TK1151|CDS

ATGAATGCCACAATTATAGATCCGTTGCAGGGGGATTTTCCAGAAGTGATAGAAGAGTATTTGGAACATGGTATTATGAAATGCATAGCTTTCAATCGCCGTGGCACTCTTCTTGCTGCTGGATGTTCAGATGGAAGCTGTGTGATATGGGATTTTGAAACACGTGGGATCGCAAAAGAGCTCCGCGATAAAGACTGTGTAGCCGCCATAACGAGTGTCTGCTGGTCAAAAAACGGCCACAACATCCTCGTATCAGCCGC...

Protein

Download Protein FASTA

548 aa · TkA03G189340|TK1151|PROTEIN

MNATIIDPLQGDFPEVIEEYLEHGIMKCIAFNRRGTLLAAGCSDGSCVIWDFETRGIAKELRDKDCVAAITSVCWSKNGHNILVSAADKSLNLWDVMKGDRIYRITLQQTPLQARLHPANSNLSLVCPFSSAPIIVHLQSESTTTLPISTTTTTTTTTTAAAPPPRNKLSDGSAHYTPTAACFNKHGDLVYVGNSIGEILIIDHKENIIRGVVAVSGGAVIKNITFSRDGRHLLTNSSDRTIRVYENLLPLNSPLTFLSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G189340
TK1151 IDTkA03G189340
OH-1004 IDLXL04_007550
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G189340
LocationChr03:47662810-47666175 (+)
DescriptionSimilar to RBL: Protein RBL
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g21060 Promotes the expression of FLC and FLC homologs to repress the floral transition. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007550 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006325 chromatin organization Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006974 DNA damage response Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0010467 gene expression Biological Process
GO:0032968 positive regulation of transcription elongation by RNA polymerase II Biological Process
GO:0043627 response to estrogen Biological Process
GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
KEGG gene cross-reference
ath:AT3G21060
ddi:DDB_G0285847
dme:Dmel_CG5585
hsa:5929
mmu:213464
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948
Rank 1 · TkA03G189340 · TK1151
Cytoplasm0.119
Rank 2 · TkA03G189340 · TK1151
Cell membrane0.025
Rank 3 · TkA03G189340 · TK1151
Mitochondrion0.012
Rank 4 · TkA03G189340 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA03G189340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24807WD40_CDC20-Fz10-64 aa
PF25047Beta-prop_TEP1_2nd15-113 aa
PF23409Beta-prop_EML18-108 aa
PF23383Beta-prop_IFT140_1st20-57 aa
PF00400WD4022-51 aa
PF25460Beta-prop_Aladin22-143 aa
PF16529Ge1_WD4022-50 aa
PF23410Beta-prop_VPS823-87 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G189340PF24807WD40_CDC20-Fz10642.3e-1557.4
TkA03G189340PF25047Beta-prop_TEP1_2nd151132.4e-1040.7
TkA03G189340PF23409Beta-prop_EML181081.9e-1144.7
TkA03G189340PF23383Beta-prop_IFT140_1st20571.8e-0731.0
TkA03G189340PF00400WD4022516.3e-2380.9
TkA03G189340PF25460Beta-prop_Aladin221434.8e-0833.2
TkA03G189340PF16529Ge1_WD4022500.06712.9
TkA03G189340PF23410Beta-prop_VPS823871.9e-0731.2
TkA03G189340PF23756Beta-prop_HPS523859.3e-0522.5
TkA03G189340PF25171Beta-prop_WDR36-Utp21_1st24942.6e-0834.3
TkA03G189340PF24797Beta-prop_WDR35_TULP_N241572.2e-0627.8
TkA03G189340PF24817WD40_WDHD1_1st25642.3e-1763.8
TkA03G189340PF25172Beta-prop_WDR3_2nd25976.5e-1039.4
TkA03G189340PF24782WD40_MABP1-WDR62_2nd25950.0005719.7
TkA03G189340PF20426NBCH_WD4025940.03713.6
TkA03G189340PF16755Beta-prop_NUP159_NUP214251100.05113.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5E915Arabidopsis thalianasp|Q5E915|RBBP_ARATH Protein RBL65.400%Swiss-ProtHigh

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