TkA03G176270 | RubberDandelionOmics

Gene overview

TkA03G176270

Reference: TK1151 Chr: Chr03 Coordinates: 44438465-44442335 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2781 bp · TkA03G176270|TK1151|cDNA

GGAACACCTTTCAAGGAAAAGGTGGGTACTCTTTTTGTAGGGGAAGAGTCAGTGAAACAACAATGGTGGTTTTGATGAGTCATTGCCGTGTCCATCCTCTGTCAGATTCCCCCTACTTTGCCATAATAATCGTCTCAAATCACCGTCATAAAAATCCCGATTCCAAATCCTTTTGAAAAGTGAAATGATTCTCAGATATACTAATCATTCATTTCCCAATGCTAAAGTTCTCCCTTCGTTCATCCTCTGGATTCAACTAC...

CDS

Download CDS FASTA

1974 bp · TkA03G176270|TK1151|CDS

ATGGGGATTTCGAGTTCAAAAGCAGAGACATGTGAAGCTTTGCGTTTATGCAAAGAGAGAAAGAAGTTCATCAAACAAGCTATCGATTCCAGGTACAATTTAGCAGCAGCACATGTCGTTTATGTCGAATCCCTTCAAAACATCGGAATCGCCCTTCGTAAATTCGCTGAAATCGAATTATCCTTAGACTCATCTTCAACTACAAATGCCGAGAAACCCCCATCGATATCTCCACCACAGACTGACGTCAATGGTGCCAC...

Protein

Download Protein FASTA

657 aa · TkA03G176270|TK1151|PROTEIN

MGISSSKAETCEALRLCKERKKFIKQAIDSRYNLAAAHVVYVESLQNIGIALRKFAEIELSLDSSSTTNAEKPPSISPPQTDVNGATGGGGGVRSDSPSPLPNVRLNYMKSSGTGAVTVNVNPPKTSNCNKVYVDDDENLAFTMSPPQPPPPPPRFSWDYFDPTDGSFRFMSQEQFQANHERFTDQVDDLGESFTPTESLKKDQTSQCEDNLVAIEADGIVKNDQKEQCDLKDDCLTDEETEFITNGGKDFLSSIKEIEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G176270`
TK1151 ID	TkA03G176270
OH-1004 ID	LXL04_007445
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G176270

Location Chr03:44438465-44442335 (+)

Description Similar to REL2: Protein ROLLING AND ERECT LEAF 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51290`	Required for the coordination of cell differentiation and cell elongation in the root tip.	No verified direct reference in this release
`At3g60320`	Required for nitrate signaling.	The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.2016 · DOI: 10.1105/tpc.15.00567

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0562700`	Involved in the regulation of leaf shape formation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007445 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0010167 response to nitrate Biological Process

GO:0015706 nitrate transmembrane transport Biological Process

GO:0030154 cell differentiation Biological Process

GO:0071249 cellular response to nitrate Biological Process

GO:0071705 nitrogen compound transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G60320

dosa:Os10g0562700

osa:4349394

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.408

Rank 1 · TkA03G176270 · TK1151

Cytoplasm0.402

Rank 2 · TkA03G176270 · TK1151

Nucleus0.309

Rank 3 · TkA03G176270 · TK1151

Endoplasmic reticulum0.051

Rank 4 · TkA03G176270 · TK1151

Plastid0.037

Rank 5 · TkA03G176270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04783DUF6301-58 aa

PF04782DUF632252-586 aa

PF04783DUF630461-481 aa

PF28521PRR11_1st512-534 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G176270	`PF04783`	DUF630	1	58	3.2e-24	85.6
TkA03G176270	`PF04782`	DUF632	252	586	3.6e-107	359.0
TkA03G176270	`PF04783`	DUF630	461	481	3.2e-24	85.6
TkA03G176270	`PF28521`	PRR11_1st	512	534	0.049	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A0A178VBJ0`	Arabidopsis thaliana	sp\|A0A178VBJ0\|APSR1_ARATH Protein ALTERED PHOSPHATE STARVATION RESPONSE 1	29.000%	Swiss-Prot	Low
`Q93YU8`	Arabidopsis thaliana	sp\|Q93YU8\|NRG2_ARATH Nitrate regulatory gene2 protein	26.300%	Swiss-Prot	Low
`Q9AQW1`	Oryza sativa subsp. japonica	sp\|Q9AQW1\|REL2_ORYSJ Protein ROLLING AND ERECT LEAF 2	27.200%	Swiss-Prot	Low

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