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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G162230
Reference: TK1151 Chr: Chr03 Coordinates: 41146405-41149503 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1242 bp · TkA03G162230|TK1151|cDNA

TATTAATGCAAAAAATAATAATATCAAAGCAAAAATGGCAGATCAACCTACAGATGAAAAGAATTGTTGTGTCTTGCAATCAAACGGTGACCGTCGAAAATTTCTCCATCGACAAATACTACACGACGCCTCTCCACCGCTGCGGTGATGTCTGCCTGCAACAATCTTCCGCCGGATATTATCGAAGCAATACTGCTGCGCCTTCCGGAGAAATCCCTCGGCCGCTTCACGTGCGTATCAAAGCAATGGTGCAGGCTAAT...

CDS

Download CDS FASTA

1059 bp · TkA03G162230|TK1151|CDS

ATGTCTGCCTGCAACAATCTTCCGCCGGATATTATCGAAGCAATACTGCTGCGCCTTCCGGAGAAATCCCTCGGCCGCTTCACGTGCGTATCAAAGCAATGGTGCAGGCTAATTTCCGATCCCCAATTTATCAAAACCCATCTACATCTACACAACCGCCATAAAACCAATAAAATGATTTTGGTGTCCGATACAAAATCCCTCTACTCACTCGATATTAACGAAATCATTCCATATCTCAACAGCAATGACGTATCCGC...

Protein

Download Protein FASTA

352 aa · TkA03G162230|TK1151|PROTEIN

MSACNNLPPDIIEAILLRLPEKSLGRFTCVSKQWCRLISDPQFIKTHLHLHNRHKTNKMILVSDTKSLYSLDINEIIPYLNSNDVSATGNEITFRRSIGWEGILGSCNGLVLAIDEDDRLYLMNPTTREVSKLPISPFALPIGESFEMYGFGYDSSTDDYKVIAISFWDTDNEHNPDCTDMFVSVYTLSTNSWRKLPNSPYDHAVGHLVSGVLVNGSLHWLTSTRPSYSSTIIAFSLANEKFKEIELPDSIDNYKAVFNE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G162230
TK1151 IDTkA03G162230
OH-1004 IDLXL04_007358
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.100
Protein coverage (%)TK1151 99.148 / OH-1004 95.355
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G162230
LocationChr03:41146405-41149503 (+)
DescriptionSimilar to At3g06240: F-box/kelch-repeat protein At3g06240
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12560 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).
An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03995.x
At3g23880 F-box/kelch-repeat protein At3g23880. No verified direct reference in this release
At3g22700 F-box protein At3g22700. No verified direct reference in this release
At3g10240 Putative F-box protein At3g10240. No verified direct reference in this release
At2g27520 F-box/LRR-repeat/kelch-repeat protein At2g27520. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007358 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008284 positive regulation of cell population proliferation Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:0042177 negative regulation of protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT3G06240
ath:AT3G07870
ath:AT3G23880
ath:AT4G12560
ath:AT4G22390
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.664
Rank 1 · TkA03G162230 · TK1151
Nucleus0.371
Rank 2 · TkA03G162230 · TK1151
Cell membrane0.103
Rank 3 · TkA03G162230 · TK1151
Endoplasmic reticulum0.069
Rank 4 · TkA03G162230 · TK1151
Lysosome / Vacuole0.049
Rank 5 · TkA03G162230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like5-43 aa
PF00646F-box6-44 aa
PF24981Beta-prop_ATRN-LZTR124-54 aa
PF07646Kelch_224-41 aa
PF01344Kelch_127-37 aa
PF08268FBA_386-297 aa
PF03478Beta-prop_KIB1-4102-322 aa
PF07734FBA_1105-334 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G162230PF12937F-box-like5432.2e-0834.5
TkA03G162230PF00646F-box6441.3e-0938.3
TkA03G162230PF24981Beta-prop_ATRN-LZTR124540.1112.5
TkA03G162230PF07646Kelch_224410.8410.4
TkA03G162230PF01344Kelch_127370.7410.1
TkA03G162230PF08268FBA_3862972.6e-2279.9
TkA03G162230PF03478Beta-prop_KIB1-41023224.7e-0833.6
TkA03G162230PF07734FBA_11053341.9e-2590.3
TkA03G162230PF07646Kelch_21732000.8410.4
TkA03G162230PF23635Beta-prop_AT5G49610-like1742540.05613.4
TkA03G162230PF24981Beta-prop_ATRN-LZTR11782710.1112.5
TkA03G162230PF01344Kelch_11831980.7410.1
TkA03G162230PF07646Kelch_22122380.8410.4
TkA03G162230PF01344Kelch_12272430.7410.1
TkA03G162230PF24981Beta-prop_ATRN-LZTR12592930.1112.5
TkA03G162230PF01344Kelch_12592660.7410.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SU30Arabidopsis thalianasp|Q9SU30|CPR1_ARATH F-box protein CPR131.600%Swiss-ProtMedium
Q9LIR8Arabidopsis thalianasp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g2388031.400%Swiss-ProtMedium
Q9LUJ1Arabidopsis thalianasp|Q9LUJ1|FB324_ARATH F-box protein At3g2270024.600%Swiss-ProtLow
Q9SS35Arabidopsis thalianasp|Q9SS35|FB137_ARATH Putative F-box protein At3g1024028.100%Swiss-ProtLow
Q9ZNQ3Arabidopsis thalianasp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/kelch-repeat protein At2g2752024.800%Swiss-ProtLow

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