TkA03G156280 | RubberDandelionOmics

Gene overview

TkA03G156280

Reference: TK1151 Chr: Chr03 Coordinates: 39615281-39618473 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2097 bp · TkA03G156280|TK1151|cDNA

ATAAAACTAAATAAATAAAACAACTGCTTTCGTGTTCATATTCATGACAGAGACGGCAGAAAAGACTCGCTACTTTTTTTTGCTTATACTCGTAGCAACTCTGCTCATAAATCTTCTCTCTCTCCCCCCTTAAAACTATATACATACATATGATATATATCGACACCCCCACTTATACATACATGCTACCCTTATTAGATCTATACCTTTCTAGTGTTTCATAGAACGGTTAAAAGAGAATTCTCATCTGGGTGTTCTCT...

CDS

Download CDS FASTA

1572 bp · TkA03G156280|TK1151|CDS

ATGGGTTTTTGGCCTAATTCGATTTTGATACTACTCGGATTGATTTTCGTGTGTTCGAGATTGATTGACGGTTTCGCGACTTTTGGATTCGATATCCATCATAGATACTCTGATCCGGTGAAGGGTATATTGGATATTGATGATCGTAACTTACCTCAGATGGGTTCAGTCGATTATTACTCTGCTATGGCCCACCGTGATCGTCTCTTCCATCGCCGCCGTCTCGCCGGCGCCGGCAGCGGTACCGTCGAGTCCTCTCT...

Protein

Download Protein FASTA

523 aa · TkA03G156280|TK1151|PROTEIN

MGFWPNSILILLGLIFVCSRLIDGFATFGFDIHHRYSDPVKGILDIDDRNLPQMGSVDYYSAMAHRDRLFHRRRLAGAGSGTVESSLAFVEGNETYQLPSLGFLHYANVSVGTPSLWFLVALDTGSDLFWIPCDCRSCVKGLVTRSGRQLEFNIYSPNTSSTSARVPCDSPSCRLKKQCSSRPDICPYQVNYLSSNTSSTGILIEDTLHLTTEDNPLKAVGAKIKFGCGMIQTGSFLDGAAPNGLFGLGMENMSVPSVLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G156280`
TK1151 ID	TkA03G156280
OH-1004 ID	LXL04_007321
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G156280

Location Chr03:39615281-39618473 (-)

Description Similar to APF1: Aspartyl protease family protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17760`	Aspartyl protease.	No verified direct reference in this release
`At5g10080`	Aspartic proteinase-like protein 1.	No verified direct reference in this release
`At1g49050`	Involved in proteolytic processing of BAG6 and plant basal immunity.	Aspartyl Protease-Mediated Cleavage of BAG6 Is Necessary for Autophagy and Fungal Resistance in Plants.2016 · DOI: 10.1105/tpc.15.00626

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007321 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G49050

ath:AT1G65240

ath:AT2G17760

ath:AT5G10080

ath:AT5G36260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.617

Rank 1 · TkA03G156280 · TK1151

Extracellular0.131

Rank 2 · TkA03G156280 · TK1151

Endoplasmic reticulum0.096

Rank 3 · TkA03G156280 · TK1151

Cytoplasm0.087

Rank 4 · TkA03G156280 · TK1151

Lysosome / Vacuole0.068

Rank 5 · TkA03G156280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N106-285 aa

PF00026Asp106-444 aa

PF14543TAXi_N320-343 aa

PF14541TAXi_C325-446 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G156280	`PF14543`	TAXi_N	106	285	6.8e-37	128.1
TkA03G156280	`PF00026`	Asp	106	444	5.7e-21	76.0
TkA03G156280	`PF14543`	TAXi_N	320	343	6.8e-37	128.1
TkA03G156280	`PF14541`	TAXi_C	325	446	3.5e-17	63.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYV9`	Arabidopsis thaliana	sp\|Q8VYV9\|APF1_ARATH Aspartyl protease family protein 1	57.100%	Swiss-Prot	High
`Q9LX20`	Arabidopsis thaliana	sp\|Q9LX20\|ASPL1_ARATH Aspartic proteinase-like protein 1	39.500%	Swiss-Prot	Medium
`Q9M9A8`	Arabidopsis thaliana	sp\|Q9M9A8\|APCB1_ARATH Aspartyl protease APCB1	26.300%	Swiss-Prot	Low

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