TkA03G130900 | RubberDandelionOmics

Gene overview

TkA03G130900

Reference: TK1151 Chr: Chr03 Coordinates: 33593042-33596580 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2301 bp · TkA03G130900|TK1151|cDNA

CAGGCAAGGAGCCCCCGCGGCTCTATATATATGATGCAGAATGCCCATATATGTGTCACTTATGCCTATAACCATTTTCAAAATGGGAAAAGTATTTGCAAATATTGCATCATATTATGTTTTTATCCTTTTCCTATTATCTAGGAAAGTAGCAAGTCGTCATTTGGATTATGACGCTGCTGAGTTGGTGTCCGATGGTGCTACTACTCCAGAACAAGAATCCTTTTTGCGTCTTAATGAAATGGATTCTTCTGAAAAGC...

CDS

Download CDS FASTA

2094 bp · TkA03G130900|TK1151|CDS

ATGCCCATATATGTGTCACTTATGCCTATAACCATTTTCAAAATGGGAAAAGTATTTGCAAATATTGCATCATATTATGTTTTTATCCTTTTCCTATTATCTAGGAAAGTAGCAAGTCGTCATTTGGATTATGACGCTGCTGAGTTGGTGTCCGATGGTGCTACTACTCCAGAACAAGAATCCTTTTTGCGTCTTAATGAAATGGATTCTTCTGAAAAGCAGTGCCACCAAATGTACTGGATTTTGCCATGTGCAACCAA...

Protein

Download Protein FASTA

697 aa · TkA03G130900|TK1151|PROTEIN

MPIYVSLMPITIFKMGKVFANIASYYVFILFLLSRKVASRHLDYDAAELVSDGATTPEQESFLRLNEMDSSEKQCHQMYWILPCATNAPSQFFLIVIYEYLLYQGEYYASGDGRFFRVFGESFWSAFFYQLLDSLPESLILLATGLMSNKEKAQDNVVMGVGLLAGSSILLLTLLWGICFICARKEFDVEPGPEQRNQETQLLTDAGINNHSQIMNFVLKMKDKVVQLSTGSGIITEDEATYNALKIFISLIPFASTLVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G130900`
TK1151 ID	TkA03G130900
OH-1004 ID	LXL04_007184
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.800
Protein coverage (%)	TK1151 99.426 / OH-1004 86.141 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G130900

Location Chr03:33593042-33596580 (-)

Description Similar to NCL2: Sodium/calcium exchanger NCL2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53210`	Possesses sodium/calcium exchanger (NCX) activity when expressed in a heterologous mammalian CHO-K1 cell system.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0212400`	May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis.	No verified direct reference in this release
`Os02g0247800`	May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007184 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006814 sodium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0055074 calcium ion homeostasis Biological Process

GO:0070588 calcium ion transmembrane transport Biological Process

GO:0071472 cellular response to salt stress Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G53210

dosa:Os01g0212400

dosa:Os02g0247800

osa:4325568

osa:4328874

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.621

Rank 1 · TkA03G130900 · TK1151

Endoplasmic reticulum0.156

Rank 2 · TkA03G130900 · TK1151

Lysosome / Vacuole0.138

Rank 3 · TkA03G130900 · TK1151

Cytoplasm0.099

Rank 4 · TkA03G130900 · TK1151

Golgi apparatus0.059

Rank 5 · TkA03G130900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06024Orf78151-179 aa

PF01699Na_Ca_ex154-189 aa

PF13405EF-hand_6231-239 aa

PF00036EF-hand_1231-239 aa

PF06024Orf78239-267 aa

PF01699Na_Ca_ex252-290 aa

PF13499EF-hand_7320-365 aa

PF16801MSL1_dimer325-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G130900	`PF06024`	Orf78	151	179	6.4	7.9
TkA03G130900	`PF01699`	Na_Ca_ex	154	189	4.8e-10	40.3
TkA03G130900	`PF13405`	EF-hand_6	231	239	0.0022	18.3
TkA03G130900	`PF00036`	EF-hand_1	231	239	0.025	14.8
TkA03G130900	`PF06024`	Orf78	239	267	6.4	7.9
TkA03G130900	`PF01699`	Na_Ca_ex	252	290	4.8e-10	40.3
TkA03G130900	`PF13499`	EF-hand_7	320	365	6.6e-05	23.9
TkA03G130900	`PF16801`	MSL1_dimer	325	343	0.5	10.9
TkA03G130900	`PF30624`	EF_SSP120	330	360	0.45	11.9
TkA03G130900	`PF13405`	EF-hand_6	350	366	0.0022	18.3
TkA03G130900	`PF23564`	EF-hand_FSTL1	398	500	0.71	11.0
TkA03G130900	`PF13405`	EF-hand_6	430	456	0.0022	18.3
TkA03G130900	`PF00036`	EF-hand_1	430	456	0.025	14.8
TkA03G130900	`PF13499`	EF-hand_7	431	497	6.6e-05	23.9
TkA03G130900	`PF13202`	EF-hand_5	431	452	1.5	9.2
TkA03G130900	`PF30624`	EF_SSP120	432	495	0.45	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L636`	Arabidopsis thaliana	sp\|Q8L636\|NCL_ARATH Sodium/calcium exchanger NCL	28.000%	Swiss-Prot	Low
`Q5QNI2`	Oryza sativa subsp. japonica	sp\|Q5QNI2\|NCL1_ORYSJ Sodium/calcium exchanger NCL1	28.300%	Swiss-Prot	Low
`Q6K3R5`	Oryza sativa subsp. japonica	sp\|Q6K3R5\|NCL2_ORYSJ Sodium/calcium exchanger NCL2	28.000%	Swiss-Prot	Low

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