TkA03G120660 | RubberDandelionOmics

Gene overview

TkA03G120660

Reference: TK1151 Chr: Chr03 Coordinates: 30845605-30851160 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1084 bp · TkA03G120660|TK1151|cDNA

GCAAATAACACACTGGTTTCCATTAAGTTAATTAAAAGTTGATAACTGTATCTATATGTGTAAAAGAAGGCGTGTATAAGGAGTACTTATACACGGTAGGAAAGCTAGGAAGGAGAGAGAGATTGTGTTACCGCTGAATCTTTGTGTTTTTTTCTGATAGATTCAGTGACTGTGAGAAAATGGGGAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAAATCAACCGACAAGTTACCTTCGCCAAGCGCAGGAATGGA...

CDS

Download CDS FASTA

738 bp · TkA03G120660|TK1151|CDS

ATGGGGAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAAATCAACCGACAAGTTACCTTCGCCAAGCGCAGGAATGGACTATTGAAAAAAGCTTACGAGCTCTCCGTTCTCTGTGATGCGGAAGTTGCGTTGATCATCTTCTCCAACAGGGGAAAACTTTATGAGTTTTGTAGCAGCTCAAGCAGCATGCTGAAAACACTGGAGAGGTATCAAAAATGCAACTATGGAGCACCAGAGTCAAATGTTTCTGCTAGGGA...

Protein

Download Protein FASTA

245 aa · TkA03G120660|TK1151|PROTEIN

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSSMLKTLERYQKCNYGAPESNVSAREALELSSQQEYLKLKTRYEALQRSQRNLLGEDLGPLNCKELESLEKQLDTSLKHIRSARTQLMLDTLSDLQKKEQALNEANRTLKQRLIEGDQVNSLHWYPHAQQEVCYERQPQHQNDEAFFHPLDCGPTLQIGYQTDSMTASGAGPSMNNYMQGWLPC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G120660`
TK1151 ID	TkA03G120660
OH-1004 ID	LXL04_025754
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G120660

Location Chr03:30845605-30851160 (-)

Description Similar to MADS4: Agamous-like MADS-box protein MADS4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g24260`	Probable transcription factor active in inflorescence development and floral organogenesis.	Complexes of MADS-box proteins are sufficient to convert leaves into floral organs.2001 · DOI: 10.1038/35054083 Mutant analysis, protein-protein interactions and subcellular localization of the Arabidopsis B sister (ABS) protein.2005 · DOI: 10.1007/s00438-005-0010-y

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001708 cell fate specification Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009888 tissue development Biological Process

GO:0009908 flower development Biological Process

GO:0010093 specification of floral organ identity Biological Process

GO:0010214 seed coat development Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048440 carpel development Biological Process

GO:0048481 plant ovule development Biological Process

GO:0048833 specification of floral organ number Biological Process

KEGG gene cross-reference

ath:AT1G24260

vvi:100232869

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974

Rank 1 · TkA03G120660 · TK1151

Cytoplasm0.093

Rank 2 · TkA03G120660 · TK1151

Cell membrane0.024

Rank 3 · TkA03G120660 · TK1151

Endoplasmic reticulum0.015

Rank 4 · TkA03G120660 · TK1151

Plastid0.009

Rank 5 · TkA03G120660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01486K-box7-19 aa

PF00319SRF-TF10-57 aa

PF18041MapZ_EC190-111 aa

PF01486K-box92-174 aa

PF18041MapZ_EC1125-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G120660	`PF01486`	K-box	7	19	2.3e-26	92.5
TkA03G120660	`PF00319`	SRF-TF	10	57	1.3e-26	92.5
TkA03G120660	`PF18041`	MapZ_EC1	90	111	0.12	13.4
TkA03G120660	`PF01486`	K-box	92	174	2.3e-26	92.5
TkA03G120660	`PF18041`	MapZ_EC1	125	181	0.12	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22456`	Arabidopsis thaliana	sp\|O22456\|SEP3_ARATH Developmental protein SEPALLATA 3	73.300%	Swiss-Prot	High

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