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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G119200
Reference: TK1151 Chr: Chr03 Coordinates: 30434834-30436575 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1131 bp · TkA03G119200|TK1151|cDNA

ATGCATGATAGGAGCCAATTTCATATAGTCCTACAAAGCAACCACTCACCGGAAACCTTAGCGTTAACCGTCTCCCACCTCCGGCTCTCTACCCTCACATCTCTCCCGGTTTCCCACGTCAACTTCCTCGCCGTCCATAACCACCGTCTTTACGCAGCCACAGGAGACCTCATCAACGTAATAGACACCACATCTTTGGCGTTAATCGACACCTTCAGCGTCGCCGGATCTTCGTCTGGGTCCGTTAAGTCTGTTACTTT...

CDS

Download CDS FASTA

1131 bp · TkA03G119200|TK1151|CDS

ATGCATGATAGGAGCCAATTTCATATAGTCCTACAAAGCAACCACTCACCGGAAACCTTAGCGTTAACCGTCTCCCACCTCCGGCTCTCTACCCTCACATCTCTCCCGGTTTCCCACGTCAACTTCCTCGCCGTCCATAACCACCGTCTTTACGCAGCCACAGGAGACCTCATCAACGTAATAGACACCACATCTTTGGCGTTAATCGACACCTTCAGCGTCGCCGGATCTTCGTCTGGGTCCGTTAAGTCTGTTACTTT...

Protein

Download Protein FASTA

376 aa · TkA03G119200|TK1151|PROTEIN

MHDRSQFHIVLQSNHSPETLALTVSHLRLSTLTSLPVSHVNFLAVHNHRLYAATGDLINVIDTTSLALIDTFSVAGSSSGSVKSVTFSNGNIYTAHQDNKIRVWKSTENKRHKHIATLPTFEDRLLRSVLPKNYVNVRRHRKKLWVEHHDAVSGLALISDQLMCSVSWDKYLKIWRISDLRCVESIKAHDDAINAVVVAADSTIFTGSADCRIKVWGKAFRKYGLISTLEKHKSAVNALALNDDGSVLLSGGSDRLILVW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G119200
TK1151 IDTkA03G119200
OH-1004 IDLXL04_025793
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 97.340 / OH-1004 89.926
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G119200
LocationChr03:30434834-30436575 (-)
DescriptionSimilar to JGB: Protein JINGUBANG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26490 Negative regulator of pollen germination. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025793 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0009846 pollen germination Biological Process
GO:0031037 myosin II filament disassembly Biological Process
GO:1903013 response to differentiation-inducing factor 1 Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005826 actomyosin contractile ring Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0016905 myosin heavy chain kinase activity Molecular Function
GO:0042802 identical protein binding Molecular Function
GO:0045159 myosin II binding Molecular Function
KEGG gene cross-reference
ana:alr3466
ath:AT2G26490
ddi:DDB_G0289115
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.524
Rank 1 · TkA03G119200 · TK1151
Cytoplasm0.362
Rank 2 · TkA03G119200 · TK1151
Cell membrane0.078
Rank 3 · TkA03G119200 · TK1151
Lysosome / Vacuole0.048
Rank 4 · TkA03G119200 · TK1151
Endoplasmic reticulum0.045
Rank 5 · TkA03G119200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23393Beta-prop_WDR90_POC16_2nd13-108 aa
PF25171Beta-prop_WDR36-Utp21_1st24-136 aa
PF23798Beta-prop_SPT827-91 aa
PF24817WD40_WDHD1_1st30-123 aa
PF19056WD40_232-98 aa
PF25175Beta-prop_WDR534-114 aa
PF25172Beta-prop_WDR3_2nd37-108 aa
PF24807WD40_CDC20-Fz37-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G119200PF23393Beta-prop_WDR90_POC16_2nd131083.1e-0730.6
TkA03G119200PF25171Beta-prop_WDR36-Utp21_1st241362.8e-1144.1
TkA03G119200PF23798Beta-prop_SPT827911.9e-0524.5
TkA03G119200PF24817WD40_WDHD1_1st301236.2e-1659.1
TkA03G119200PF19056WD40_232987.3e-0522.4
TkA03G119200PF25175Beta-prop_WDR5341144.2e-40138.6
TkA03G119200PF25172Beta-prop_WDR3_2nd371082.1e-2177.1
TkA03G119200PF24807WD40_CDC20-Fz371103.9e-1866.5
TkA03G119200PF00400WD4038568.8e-31105.7
TkA03G119200PF03478Beta-prop_KIB1-438620.01615.5
TkA03G119200PF16819DUF5074391160.003217.6
TkA03G119200PF25178Beta-prop_WDR41421172.8e-0627.1
TkA03G119200PF23409Beta-prop_EML431122.3e-1351.0
TkA03G119200PF23609Beta-prop_EIPR1441040.01915.2
TkA03G119200PF23381Beta-prop_IFT122_1st471103.3e-2486.4
TkA03G119200PF25174Beta-prop_THOC3491162.9e-2692.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48716Arabidopsis thalianasp|O48716|JGB_ARATH Protein JINGUBANG47.500%Swiss-ProtLow

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