TkA03G118020 | RubberDandelionOmics

Gene overview

TkA03G118020

Reference: TK1151 Chr: Chr03 Coordinates: 30154511-30155095 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · TkA03G118020|TK1151|cDNA

ATGGGAAGTGCTTTAGAGACAGTATGTGGCCAAGCATACGGCGCCGGAAAGATCGAAATGACAACCACCATAGCGACAGCCGCCGGAAACTTCGCCGTTTGGATGATTCCACAGCTGTTCGCTTACGCCACCGTGATCCCCATAGCCAAGTTCTTACAAGCACAAAGCAACATTATGCCTATGGCCGTGATTTCTGTGATGGCAGCCGTCAGCCATGTATTTTTGAGCTGGGTGTTCATGGTGAAGCTCGGGTGGGGTCT...

CDS

Download CDS FASTA

480 bp · TkA03G118020|TK1151|CDS

ATGGGAAGTGCTTTAGAGACAGTATGTGGCCAAGCATACGGCGCCGGAAAGATCGAAATGACAACCACCATAGCGACAGCCGCCGGAAACTTCGCCGTTTGGATGATTCCACAGCTGTTCGCTTACGCCACCGTGATCCCCATAGCCAAGTTCTTACAAGCACAAAGCAACATTATGCCTATGGCCGTGATTTCTGTGATGGCAGCCGTCAGCCATGTATTTTTGAGCTGGGTGTTCATGGTGAAGCTCGGGTGGGGTCT...

Protein

Download Protein FASTA

159 aa · TkA03G118020|TK1151|PROTEIN

MGSALETVCGQAYGAGKIEMTTTIATAAGNFAVWMIPQLFAYATVIPIAKFLQAQSNIMPMAVISVMAAVSHVFLSWVFMVKLGWGLAGAAVVLNSSWWFITTAQIAYVMWGSCGEAWSGFSWKAFRNLKGFLHVSFTTAVMFWYDSIEDSKFITKRSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G118020`
TK1151 ID	TkA03G118020
OH-1004 ID	LXL04_025816
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.000
Protein coverage (%)	TK1151 100.000 / OH-1004 72.119 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G118020

Location Chr03:30154511-30155095 (+)

Description Similar to DTX29: Protein DETOXIFICATION 29

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26590`	Protein DETOXIFICATION 29.	No verified direct reference in this release
`At5g38030`	Protein DETOXIFICATION 30.	No verified direct reference in this release
`At1g23300`	Protein DETOXIFICATION 32.	No verified direct reference in this release
`At1g47530`	Protein DETOXIFICATION 33.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025816 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0048767 root hair elongation Biological Process

GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G12950

ath:AT1G23300

ath:AT1G47530

ath:AT3G26590

ath:AT5G38030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.550

Rank 1 · TkA03G118020 · TK1151

Lysosome / Vacuole0.177

Rank 2 · TkA03G118020 · TK1151

Endoplasmic reticulum0.150

Rank 3 · TkA03G118020 · TK1151

Cytoplasm0.062

Rank 4 · TkA03G118020 · TK1151

Golgi apparatus0.056

Rank 5 · TkA03G118020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01554MatE1-25 aa

PF01554MatE22-78 aa

PF01554MatE90-103 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G118020	`PF01554`	MatE	1	25	5e-07	30.3
TkA03G118020	`PF01554`	MatE	22	78	5e-07	30.3
TkA03G118020	`PF01554`	MatE	90	103	5e-07	30.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38956`	Arabidopsis thaliana	sp\|Q38956\|DTX29_ARATH Protein DETOXIFICATION 29	49.500%	Swiss-Prot	Medium
`Q9LS19`	Arabidopsis thaliana	sp\|Q9LS19\|DTX30_ARATH Protein DETOXIFICATION 30	48.400%	Swiss-Prot	Medium
`F4I4Q3`	Arabidopsis thaliana	sp\|F4I4Q3\|DTX32_ARATH Protein DETOXIFICATION 32	47.300%	Swiss-Prot	Medium
`Q9SX83`	Arabidopsis thaliana	sp\|Q9SX83\|DTX33_ARATH Protein DETOXIFICATION 33	44.600%	Swiss-Prot	Medium

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