TkA03G103320 | RubberDandelionOmics

Gene overview

TkA03G103320

Reference: TK1151 Chr: Chr03 Coordinates: 26404868-26405542 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

675 bp · TkA03G103320|TK1151|cDNA

TTTCAGTGTGAGAACGGCCATATAGCATGCTCATCATGCTGCTCTGACGTGGAAAATACATGCCCTTCTTGCCGCAAGCCAATTGGATCCATTCGTTGCCGAGCTGTAGAAAAGATTCTAGAATCCGTTAAAGTATCATGCAAATACTCTCACAATGGTTGCAAAGCAAAAATGCCTTATACCGAAAAAAATCATCACGAAAAAATATGCCTCTACGTCACATGTTTTTGCCCCCACCCTTCGTGTCTCTTTTCCGGTTA...

CDS

Download CDS FASTA

675 bp · TkA03G103320|TK1151|CDS

TTTCAGTGTGAGAACGGCCATATAGCATGCTCATCATGCTGCTCTGACGTGGAAAATACATGCCCTTCTTGCCGCAAGCCAATTGGATCCATTCGTTGCCGAGCTGTAGAAAAGATTCTAGAATCCGTTAAAGTATCATGCAAATACTCTCACAATGGTTGCAAAGCAAAAATGCCTTATACCGAAAAAAATCATCACGAAAAAATATGCCTCTACGTCACATGTTTTTGCCCCCACCCTTCGTGTCTCTTTTCCGGTTA...

Protein

Download Protein FASTA

224 aa · TkA03G103320|TK1151|PROTEIN

FQCENGHIACSSCCSDVENTCPSCRKPIGSIRCRAVEKILESVKVSCKYSHNGCKAKMPYTEKNHHEKICLYVTCFCPHPSCLFSGYFKNLSVHFGIQHTASTTRFTYNTNFTLFLGLNQKHIFLQNEDNNGIFILNQEVKEHGRGFNVDRVGPKFLSCYYMYKLTAKNMRTSLSLKSEPEVYAKWSWSENTPRKNCLTVPSEFLGYNGVLSLDVCIKRIQYGL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G103320`
TK1151 ID	TkA03G103320
OH-1004 ID	LXL04_007013
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	57.100
Protein coverage (%)	TK1151 97.768 / OH-1004 28.818 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G103320

Location Chr03:26404868-26405542 (-)

Description Similar to At5g37930: E3 ubiquitin-protein ligase SINA-like 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g37930`	E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g66620`	E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g37870`	E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g37890`	E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g66630`	E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007013 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009411 response to UV Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

KEGG gene cross-reference

ath:AT1G66620

ath:AT5G37870

ath:AT5G37890

ath:AT5G37910

ath:AT5G37930

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.698

Rank 1 · TkA03G103320 · TK1151

Nucleus0.371

Rank 2 · TkA03G103320 · TK1151

Mitochondrion0.061

Rank 3 · TkA03G103320 · TK1151

Cell membrane0.057

Rank 4 · TkA03G103320 · TK1151

Extracellular0.045

Rank 5 · TkA03G103320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21362Sina_RING1-24 aa

PF20173ZnF_RZ-type1-36 aa

PF21361Sina_ZnF3-15 aa

PF10601zf-LITAF-like10-30 aa

PF21361Sina_ZnF38-101 aa

PF10601zf-LITAF-like42-83 aa

PF21362Sina_RING45-55 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G103320	`PF21362`	Sina_RING	1	24	2.6e-05	25.0
TkA03G103320	`PF20173`	ZnF_RZ-type	1	36	0.16	12.3
TkA03G103320	`PF21361`	Sina_ZnF	3	15	1.5e-11	45.3
TkA03G103320	`PF10601`	zf-LITAF-like	10	30	0.12	13.2
TkA03G103320	`PF21361`	Sina_ZnF	38	101	1.5e-11	45.3
TkA03G103320	`PF10601`	zf-LITAF-like	42	83	0.12	13.2
TkA03G103320	`PF21362`	Sina_RING	45	55	2.6e-05	25.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84K34`	Arabidopsis thaliana	sp\|Q84K34\|SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10	33.200%	Swiss-Prot	Medium
`Q9C6H3`	Arabidopsis thaliana	sp\|Q9C6H3\|SINL2_ARATH E3 ubiquitin-protein ligase SINA-like 2	34.800%	Swiss-Prot	Medium
`Q9FKD9`	Arabidopsis thaliana	sp\|Q9FKD9\|SINL6_ARATH Putative E3 ubiquitin-protein ligase SINA-like 6	29.500%	Swiss-Prot	Low
`Q9FKD7`	Arabidopsis thaliana	sp\|Q9FKD7\|SINL7_ARATH E3 ubiquitin-protein ligase SINA-like 7	31.700%	Swiss-Prot	Medium
`Q9C6H2`	Arabidopsis thaliana	sp\|Q9C6H2\|SINL3_ARATH E3 ubiquitin-protein ligase SINA-like 3	32.100%	Swiss-Prot	Medium

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