Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2355 bp · TkA03G100960|TK1151|cDNA
GGGAGGGAGTAAATTAAAAGCGGAAACTGTTTGAAAATCAGAAAGTCGATTCACAGAAATTTCCCTTCCGAAAATCTTTTAAGAGGCAACGGTGATCATCTCCGACGTAGTCAACATACACGGAGTATAAACTTCTGCAGGTGTGGCTCGTTCTGTTACTGTCTGATTAATAGCAGGTCCGGAATCAGAATGGACATGGAACAAGAATCGGAATGGAAAGCAGCACAAAATATCTTCATAAGTGAAGATCTTGTGGCTGC...
1884 bp · TkA03G100960|TK1151|CDS
ATGGACATGGAACAAGAATCGGAATGGAAAGCAGCACAAAATATCTTCATAAGTGAAGATCTTGTGGCTGCTGCCAAACATCAGCTCCAGTTTCTTGCAGTTGTAGACAGAAATCGTTGGCTGTATGAAGGCCAGACTTTACAATGGGCAATCTATAGGTACAATGCATGCTGGCTTCCATTGCTTGCTAAACATTCAGAGTCTAAAGTCACTGAAGGACCATTAGTTGTTCCTCTTGATTGTGAATGGATCTGGCATTG...
Protein
Download Protein FASTA627 aa · TkA03G100960|TK1151|PROTEIN
MDMEQESEWKAAQNIFISEDLVAAAKHQLQFLAVVDRNRWLYEGQTLQWAIYRYNACWLPLLAKHSESKVTEGPLVVPLDCEWIWHCHRLNPVRYKSDCEEIYGRILDNYKVVSSIQETSRKETEEIWNKLYPNQPYEFNISLASSSQFSETLYGTQKFSKYDFILAVERQTPFFYQVSRPHFNKDFFLEEAVARYKGFLHLIRRNRERSLMRFCVPTYDVDLIWHTHQLHPVSYCKDLVKLLGKVLEHDDTDQNRGKGQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G100960 |
|---|---|
| TK1151 ID | TkA03G100960 |
| OH-1004 ID | LXL04_006951 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 96.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 98.587Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G100960 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:25493318-25497882 (-) | |||||||||
| Description | Similar to GRDP2: Glycine-rich domain-containing protein 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009734 auxin-activated signaling pathway Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process GO:0010928 regulation of auxin mediated signaling pathway Biological Process GO:0071470 cellular response to osmotic stress Biological Process GO:2000028 regulation of photoperiodism, flowering Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G22660 ath:AT4G37900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07173GRDP-like12-98 aaPF27765UCP032817-like84-109 aaPF07173GRDP-like94-238 aaPF27765UCP032817-like196-258 aaPF25334C2_GRDP325-449 aaPF25335GRDP_C484-605 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G100960 | PF07173 | GRDP-like | 12 | 98 | 2.2e-62 | 210.7 |
| TkA03G100960 | PF27765 | UCP032817-like | 84 | 109 | 0.013 | 16.1 |
| TkA03G100960 | PF07173 | GRDP-like | 94 | 238 | 2.2e-62 | 210.7 |
| TkA03G100960 | PF27765 | UCP032817-like | 196 | 258 | 0.013 | 16.1 |
| TkA03G100960 | PF25334 | C2_GRDP | 325 | 449 | 3.8e-39 | 134.5 |
| TkA03G100960 | PF25335 | GRDP_C | 484 | 605 | 9e-29 | 101.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.