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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G090840
Reference: TK1151 Chr: Chr03 Coordinates: 23132199-23136636 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1498 bp · TkA03G090840|TK1151|cDNA

CTCTTCATCATAAAGCCTTCGGTTCTCGAATTTCCCCAATTTGGTACGCAAATCGCCTGGACACAAACTCCATCTTGCGCCTTGCCCTTGACAACAAATCATATCACAGAAGACTATAGCACTCAAATTTCTCCAACAGTTAGATCAAGACTATCAGGCAACCCAATATTTTAAAATCATGGAGCTAAATTCCATCAAAGACGCATTCGACCGAGTAACAAAAAAGCAAAAACTCACAACCTCCAAATCCCAAGAAGCAA...

CDS

Download CDS FASTA

1143 bp · TkA03G090840|TK1151|CDS

ATGGAGCTAAATTCCATCAAAGACGCATTCGACCGAGTAACAAAAAAGCAAAAACTCACAACCTCCAAATCCCAAGAAGCAATCGAACAAATCACCCAAGAAATCAACACCGCAATATCCCTACTCCAAACCACCCCCACCCCCACCACCCCCACCCCAATCCTCACCGACCTGAAATCAAAACTCAAAACCACCCCCCCACTCACCCCCCTCGAATCCACCCAAAAAGACCTCAACATCGCCTTCAGCAAATACACAAA...

Protein

Download Protein FASTA

380 aa · TkA03G090840|TK1151|PROTEIN

MELNSIKDAFDRVTKKQKLTTSKSQEAIEQITQEINTAISLLQTTPTPTTPTPILTDLKSKLKTTPPLTPLESTQKDLNIAFSKYTKLLEKQFNPDISKSYRHIDFPNPTINQIIATHLYREGLFDIADSFSNNSPILQTKKTQFLEMHKILDSMKEHDLTPALTWATANRESLKKNRSDIELKLHRLQFMEIVKTGHRDDAIKYARAHFSHFPDRLPEIQKLMACLLWIGRLERLPYTEFLSPTHWVRLSRELTREFCG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G090840
TK1151 IDTkA03G090840
OH-1004 IDLXL04_001472
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)34.700
Protein coverage (%)TK1151 88.158 / OH-1004 34.938
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G090840
LocationChr03:23132199-23136636 (+)
DescriptionSimilar to HEMA1: Glutamyl-tRNA reductase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37880 Protein RMD5 homolog. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001472 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006779 porphyrin-containing compound biosynthetic process Biological Process
GO:0006782 protoporphyrinogen IX biosynthetic process Biological Process
GO:0006783 heme biosynthetic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0015995 chlorophyll biosynthetic process Biological Process
GO:0033014 tetrapyrrole biosynthetic process Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0008883 glutamyl-tRNA reductase activity Molecular Function
KEGG gene cross-reference
ag:CAA63140
ath:AT1G09940
ath:AT1G58290
csv:101208135
csv:101220615
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.703
Rank 1 · TkA03G090840 · TK1151
Cytoplasm0.504
Rank 2 · TkA03G090840 · TK1151
Mitochondrion0.040
Rank 3 · TkA03G090840 · TK1151
Peroxisome0.025
Rank 4 · TkA03G090840 · TK1151
Cell membrane0.022
Rank 5 · TkA03G090840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16989T6SS_VasJ12-47 aa
PF04641Rtf222-23 aa
PF19097Snu56_snRNP23-26 aa
PF10607CTLH24-94 aa
PF19097Snu56_snRNP79-179 aa
PF28522ELL1_C133-156 aa
PF16989T6SS_VasJ142-187 aa
PF10607CTLH144-284 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G090840PF16989T6SS_VasJ12470.03714.1
TkA03G090840PF04641Rtf222230.02814.5
TkA03G090840PF19097Snu56_snRNP23260.01914.4
TkA03G090840PF10607CTLH24943.4e-39135.0
TkA03G090840PF19097Snu56_snRNP791790.01914.4
TkA03G090840PF28522ELL1_C1331560.1413.1
TkA03G090840PF16989T6SS_VasJ1421870.03714.1
TkA03G090840PF10607CTLH1442843.4e-39135.0
TkA03G090840PF16989T6SS_VasJ1832230.03714.1
TkA03G090840PF29536PTR3_N3163690.03314.5
TkA03G090840PF24921RING_XB3-XBAT313173280.02415.4
TkA03G090840PF04641Rtf23173700.02814.5
TkA03G090840PF13445zf-RING_UBOX3223642.7e-0834.4
TkA03G090840PF14634zf-RING_53223665.8e-0523.7
TkA03G090840PF13639zf-RING_23223660.0002621.9
TkA03G090840PF14447Prok-RING_43323710.113.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T075Arabidopsis thalianasp|Q9T075|RMD5_ARATH Protein RMD5 homolog54.100%Swiss-ProtHigh

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