TkA03G077770 | RubberDandelionOmics

Gene overview

TkA03G077770

Reference: TK1151 Chr: Chr03 Coordinates: 19846760-19847161 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

402 bp · TkA03G077770|TK1151|cDNA

ATGGCGCCATCTCTTCTTCTATACTCGCAAATCGCACTATGCCTCATGTCACTCGCACTTGTACGCGCCGACGTATCAGTGGTGAACGCCGGGAACGACCACTCGCTGCATCTCGTCACCGACGAGCTCGACTGGCCGACATCGCCGATGTCTATGTACGACGGAATTGACGAGATCGATGTTGGAACCGACGAAGATCTCTCCACCGCCGCCGCCGGTCGTAGATTTCTGTTCTGGAAGAGGTTTGGGTACTACATTTC...

CDS

Download CDS FASTA

402 bp · TkA03G077770|TK1151|CDS

ATGGCGCCATCTCTTCTTCTATACTCGCAAATCGCACTATGCCTCATGTCACTCGCACTTGTACGCGCCGACGTATCAGTGGTGAACGCCGGGAACGACCACTCGCTGCATCTCGTCACCGACGAGCTCGACTGGCCGACATCGCCGATGTCTATGTACGACGGAATTGACGAGATCGATGTTGGAACCGACGAAGATCTCTCCACCGCCGCCGCCGGTCGTAGATTTCTGTTCTGGAAGAGGTTTGGGTACTACATTTC...

Protein

Download Protein FASTA

133 aa · TkA03G077770|TK1151|PROTEIN

MAPSLLLYSQIALCLMSLALVRADVSVVNAGNDHSLHLVTDELDWPTSPMSMYDGIDEIDVGTDEDLSTAAAGRRFLFWKRFGYYISYAALSANRVPCPPRSGRSYYTHNCWKARGPVHPYSRGCSALTRCRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G077770`
TK1151 ID	TkA03G077770
OH-1004 ID	LXL04_024339
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	54.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G077770

Location Chr03:19846760-19847161 (+)

Description Similar to RALFL34: Protein RALF-like 34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67070`	Cell signaling peptide that may regulate plant stress, growth, and development.	No verified direct reference in this release
`At3g16570`	Cell signaling peptide that may regulate plant stress, growth, and development.	Regulation and processing of a plant peptide hormone, AtRALF23, in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03926.x
`At4g15800`	Cell signaling peptide that may regulate plant stress, growth, and development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024339 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007267 cell-cell signaling Biological Process

GO:0009611 response to wounding Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0040008 regulation of growth Biological Process

GO:0045926 negative regulation of growth Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT1G28270

ath:AT3G05490

ath:AT3G16570

ath:AT4G15800

ath:AT5G67070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.826

Rank 1 · TkA03G077770 · TK1151

Endoplasmic reticulum0.066

Rank 2 · TkA03G077770 · TK1151

Cell membrane0.062

Rank 3 · TkA03G077770 · TK1151

Cytoplasm0.036

Rank 4 · TkA03G077770 · TK1151

Nucleus0.031

Rank 5 · TkA03G077770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05498RALF65-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G077770	`PF05498`	RALF	65	133	3.1e-22	80.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHA6`	Arabidopsis thaliana	sp\|Q9FHA6\|RLF34_ARATH Protein RALF-like 34	64.400%	Swiss-Prot	High
`Q9LUS7`	Arabidopsis thaliana	sp\|Q9LUS7\|RLF23_ARATH Rapid alkalinization factor 23	55.000%	Swiss-Prot	Low
`Q8L9P8`	Arabidopsis thaliana	sp\|Q8L9P8\|RLF33_ARATH Protein RALF-like 33	61.200%	Swiss-Prot	Low

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