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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G058090
Reference: TK1151 Chr: Chr03 Coordinates: 14973361-14977508 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2736 bp · TkA03G058090|TK1151|cDNA

CTAAAACCCCAGCCCTATAAGATTTTTCCATCTTCCTTGTTTAGAGATGAGCTAAATTTTGCTCTCATGGAATCCTTAAGCTTAAGGGTGCCACCACGTCCACCCCTCCCTTCTCAACATCCAGACGTCGAGCCCATCAAGCACAATCTTCTAAAAAATGGCGTCATTCCAACCCCTAAAATCATCCACACCCTCCGCAAAAAACAGCTTCAAAAAATCAACCGCCGCCGTCCTCCGCCCAACCAAACCCCAGAAGAAGA...

CDS

Download CDS FASTA

2364 bp · TkA03G058090|TK1151|CDS

ATGGAATCCTTAAGCTTAAGGGTGCCACCACGTCCACCCCTCCCTTCTCAACATCCAGACGTCGAGCCCATCAAGCACAATCTTCTAAAAAATGGCGTCATTCCAACCCCTAAAATCATCCACACCCTCCGCAAAAAACAGCTTCAAAAAATCAACCGCCGCCGTCCTCCGCCCAACCAAACCCCAGAAGAAGAACAAATTCAAGATGAAGAAGCCAATTTCCAGACGTTAAAGGCCGAATTCAAAACCTTCAACAGGGC...

Protein

Download Protein FASTA

787 aa · TkA03G058090|TK1151|PROTEIN

MESLSLRVPPRPPLPSQHPDVEPIKHNLLKNGVIPTPKIIHTLRKKQLQKINRRRPPPNQTPEEEQIQDEEANFQTLKAEFKTFNRAIVKATKSKQDMDINHGVVSSSSLVGKPWERLERTELREHAITNKEFVGGDNLKYEHLDELSELSGTEPSMKNWKFSKMMKQSELQFTEDQLLKIVGGLGDKGQWRHALSVVKWIYNSKEHKHFKSRFVYTKLLSVLGKARRPHEALQIFNFMRADYHIYPDMAAYHCIAIALG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G058090
TK1151 IDTkA03G058090
OH-1004 IDLXL04_006690
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.600
Protein coverage (%)TK1151 100.000 / OH-1004 83.972
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G058090
LocationChr03:14973361-14977508 (-)
DescriptionSimilar to DG1: Pentatricopeptide repeat-containing protein At5g67570, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g67570 Involved in the regulation of early chloroplast development and chloroplast gene expression in a SIGF-dependent manner. No verified direct reference in this release
At1g30610 May play a role in embryogenesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006690 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0042793 plastid transcription Biological Process
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G30610
ath:AT5G02860
ath:AT5G67570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.708
Rank 1 · TkA03G058090 · TK1151
Mitochondrion0.147
Rank 2 · TkA03G058090 · TK1151
Nucleus0.089
Rank 3 · TkA03G058090 · TK1151
Cytoplasm0.024
Rank 4 · TkA03G058090 · TK1151
Cell membrane0.012
Rank 5 · TkA03G058090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N47-98 aa
PF12921ATP13161-207 aa
PF23276TPR_24164-203 aa
PF13041PPR_2182-200 aa
PF01535PPR182-198 aa
PF29070MSC6_N188-268 aa
PF17177PPR_long212-382 aa
PF23276TPR_24213-280 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G058090PF29070MSC6_N47981.3e-0731.8
TkA03G058090PF12921ATP131612074.1e-0524.1
TkA03G058090PF23276TPR_241642035.7e-1246.4
TkA03G058090PF13041PPR_21822007.6e-2897.1
TkA03G058090PF01535PPR1821982.1e-2587.8
TkA03G058090PF29070MSC6_N1882681.3e-0731.8
TkA03G058090PF17177PPR_long2123824.5e-1040.0
TkA03G058090PF23276TPR_242132805.7e-1246.4
TkA03G058090PF13041PPR_22142537.6e-2897.1
TkA03G058090PF12854PPR_12142406.9e-1142.4
TkA03G058090PF01535PPR2152402.1e-2587.8
TkA03G058090PF13812PPR_32162555e-2278.5
TkA03G058090PF12921ATP132422764.1e-0524.1
TkA03G058090PF13041PPR_22472777.6e-2897.1
TkA03G058090PF13812PPR_32472785e-2278.5
TkA03G058090PF01535PPR2522772.1e-2587.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJW6Arabidopsis thalianasp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570, chloroplastic46.300%Swiss-ProtMedium
Q9SA76Arabidopsis thalianasp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610, chloroplastic29.400%Swiss-ProtLow

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