TkA03G057410 | RubberDandelionOmics

Gene overview

TkA03G057410

Reference: TK1151 Chr: Chr03 Coordinates: 14775147-14776430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · TkA03G057410|TK1151|cDNA

ATGGTCGCCGGAACTACAGTAGCTCTGCTACTACTGTGGGCGTTCTGGCCGATAATCAGCTTCACTTTTCCTTCTCCCGGCCGCCAAACCATTAATTTCAGAACCAGAGGTCATTCGTACAGAATATTTGCCGACGTAAACCACACGGTTGTCAAGGACGGACTTCGGTTTAATCTGACGCACGACCCGCCGCAACCCACATTCTACGACGACCCGGAACTCACATACACCATTGACAAACCTATAAAAAATTGGGACGA...

CDS

Download CDS FASTA

1128 bp · TkA03G057410|TK1151|CDS

ATGGTCGCCGGAACTACAGTAGCTCTGCTACTACTGTGGGCGTTCTGGCCGATAATCAGCTTCACTTTTCCTTCTCCCGGCCGCCAAACCATTAATTTCAGAACCAGAGGTCATTCGTACAGAATATTTGCCGACGTAAACCACACGGTTGTCAAGGACGGACTTCGGTTTAATCTGACGCACGACCCGCCGCAACCCACATTCTACGACGACCCGGAACTCACATACACCATTGACAAACCTATAAAAAATTGGGACGA...

Protein

Download Protein FASTA

375 aa · TkA03G057410|TK1151|PROTEIN

MVAGTTVALLLLWAFWPIISFTFPSPGRQTINFRTRGHSYRIFADVNHTVVKDGLRFNLTHDPPQPTFYDDPELTYTIDKPIKNWDEKRREWLSLHPTFTPGVEERLRFFKNKVDYCRIHGHDIFYNNVLFHPDMFTYWAKIPSVRAVMLAHPEAEWIWWVDSDAVFTDMDFKLPLERYKNHNFVVHGWPEMIYKKKSWTGLNAGVFLIRNNQWALDFMEVWSGMGPQTPNYEKWGKILKETCKDKFFPESDDQTGLVYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G057410`
TK1151 ID	TkA03G057410
OH-1004 ID	LXL04_006672
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.400
Protein coverage (%)	TK1151 100.000 / OH-1004 96.388 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G057410

Location Chr03:14775147-14776430 (-)

Description Similar to GMGT1: Galactomannan galactosyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22900`	Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan.	No verified direct reference in this release
`At4g37690`	Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2X933`	Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan.	No verified direct reference in this release
`Os02g0723200`	Probable glycosyltransferase that may be involved in the biosynthesis of xyloglucan.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006672 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010192 mucilage biosynthetic process Biological Process

GO:0010214 seed coat development Biological Process

GO:0010392 galactoglucomannan metabolic process Biological Process

GO:0051070 galactomannan biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0008378 galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G22900

ath:AT4G37690

dosa:Os02g0723200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.757

Rank 1 · TkA03G057410 · TK1151

Endoplasmic reticulum0.150

Rank 2 · TkA03G057410 · TK1151

Cytoplasm0.096

Rank 3 · TkA03G057410 · TK1151

Extracellular0.057

Rank 4 · TkA03G057410 · TK1151

Cell membrane0.053

Rank 5 · TkA03G057410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05637Glyco_transf_34107-323 aa

PF00535Glycos_transf_2154-198 aa

PF03407Nucleotid_trans161-327 aa

PF03314DUF273166-254 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G057410	`PF05637`	Glyco_transf_34	107	323	1.2e-53	183.0
TkA03G057410	`PF00535`	Glycos_transf_2	154	198	0.092	13.4
TkA03G057410	`PF03407`	Nucleotid_trans	161	327	0.0015	19.3
TkA03G057410	`PF03314`	DUF273	166	254	0.021	15.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O81007`	Arabidopsis thaliana	sp\|O81007\|GT7_ARATH Putative glycosyltransferase 7	51.200%	Swiss-Prot	High
`Q9SZG1`	Arabidopsis thaliana	sp\|Q9SZG1\|GT6_ARATH Glycosyltransferase 6	49.200%	Swiss-Prot	Medium
`A2X933`	Oryza sativa subsp. indica	sp\|A2X933\|GT7_ORYSI Probable glycosyltransferase 7	51.200%	Swiss-Prot	High
`Q6Z5M3`	Oryza sativa subsp. japonica	sp\|Q6Z5M3\|GT7_ORYSJ Probable glycosyltransferase 7	51.200%	Swiss-Prot	High

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