TkA03G050350 | RubberDandelionOmics

Gene overview

TkA03G050350

Reference: TK1151 Chr: Chr03 Coordinates: 13249499-13252167 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1083 bp · TkA03G050350|TK1151|cDNA

ATGGGATTTGATGGTGTTTGCAACAAGAATCTTGTCTTAGAGTTAGGTCTTAACTCATCATCATCATCATCCATGGCAGAAAACAACTCCATCAACCCCACCAAGAAGCCTTGTAGCGGCCTGAATTTTGAGCCTTCCTTAACCTTGGCTCTTTCCGATGAGAGTGTTAGTGGTGGTTGTTCATCGTTTTCAGTTGCGAGTGTGAGTGTTAAGAGGGAAAGAGAGGTGAAAAGTGAAGATTCAGAGAGAGTTCATGAACT...

CDS

Download CDS FASTA

741 bp · TkA03G050350|TK1151|CDS

ATGGGATTTGATGGTGTTTGCAACAAGAATCTTGTCTTAGAGTTAGGTCTTAACTCATCATCATCATCATCCATGGCAGAAAACAACTCCATCAACCCCACCAAGAAGCCTTGTAGCGGCCTGAATTTTGAGCCTTCCTTAACCTTGGCTCTTTCCGATGAGAGTGTTAGTGGTGGTTGTTCATCGTTTTCAGTTGCGAGTGTGAGTGTTAAGAGGGAAAGAGAGGTGAAAAGTGAAGATTCAGAGAGAGTTCATGAACT...

Protein

Download Protein FASTA

246 aa · TkA03G050350|TK1151|PROTEIN

MGFDGVCNKNLVLELGLNSSSSSSMAENNSINPTKKPCSGLNFEPSLTLALSDESVSGGCSSFSVASVSVKREREVKSEDSERVHELELDENDDGTVNGRKKLRLTKAQSALLEDAFKHHSTLNPQKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCEALKEENNRLHKELQELKALKLSTQPLYMQLPAATLTMCPSCERIGDTTSAAKSRPFTMAPKPHLFNPFTNSSAAC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G050350`
TK1151 ID	TkA03G050350
OH-1004 ID	LXL04_006620
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G050350

Location Chr03:13249499-13252167 (-)

Description Similar to HAT22: Homeobox-leucine zipper protein HAT22

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37790`	Probable transcription factor.	No verified direct reference in this release
`At2g22800`	Probable transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XE76`	Probable transcription factor.	No verified direct reference in this release
`Os03g0231000`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2Z4C4`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006620 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0001217 DNA-binding transcription repressor activity Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G22800

ath:AT4G37790

ath:AT5G06710

dosa:Os03g0231000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · TkA03G050350 · TK1151

Cytoplasm0.074

Rank 2 · TkA03G050350 · TK1151

Cell membrane0.020

Rank 3 · TkA03G050350 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA03G050350 · TK1151

Plastid0.008

Rank 5 · TkA03G050350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25450Rab11-FIP372-93 aa

PF00046Homeodomain100-155 aa

PF25450Rab11-FIP3113-188 aa

PF02183HALZ126-137 aa

PF05920Homeobox_KN127-153 aa

PF18035Bap31_Bap29_C128-135 aa

PF19776DUF6262133-187 aa

PF24245INO80F136-158 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G050350	`PF25450`	Rab11-FIP3	72	93	2.7	9.0
TkA03G050350	`PF00046`	Homeodomain	100	155	3.2e-14	53.2
TkA03G050350	`PF25450`	Rab11-FIP3	113	188	2.7	9.0
TkA03G050350	`PF02183`	HALZ	126	137	3.3e-10	40.7
TkA03G050350	`PF05920`	Homeobox_KN	127	153	0.00011	22.7
TkA03G050350	`PF18035`	Bap31_Bap29_C	128	135	0.038	14.7
TkA03G050350	`PF19776`	DUF6262	133	187	0.84	10.6
TkA03G050350	`PF24245`	INO80F	136	158	0.62	10.9
TkA03G050350	`PF18035`	Bap31_Bap29_C	154	188	0.038	14.7
TkA03G050350	`PF02183`	HALZ	157	191	3.3e-10	40.7
TkA03G050350	`PF24245`	INO80F	163	188	0.62	10.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P46604`	Arabidopsis thaliana	sp\|P46604\|HAT22_ARATH Homeobox-leucine zipper protein HAT22	54.500%	Swiss-Prot	High
`P46603`	Arabidopsis thaliana	sp\|P46603\|HAT9_ARATH Homeobox-leucine zipper protein HAT9	54.700%	Swiss-Prot	High
`A2XE76`	Oryza sativa subsp. indica	sp\|A2XE76\|HOX19_ORYSI Homeobox-leucine zipper protein HOX19	58.200%	Swiss-Prot	High
`Q8GRL4`	Oryza sativa subsp. japonica	sp\|Q8GRL4\|HOX19_ORYSJ Homeobox-leucine zipper protein HOX19	58.200%	Swiss-Prot	High
`A2Z4C4`	Oryza sativa subsp. indica	sp\|A2Z4C4\|HOX15_ORYSI Homeobox-leucine zipper protein HOX15	62.000%	Swiss-Prot	Medium

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