TkA03G047230 | RubberDandelionOmics

Gene overview

TkA03G047230

Reference: TK1151 Chr: Chr03 Coordinates: 12460876-12462735 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1122 bp · TkA03G047230|TK1151|cDNA

TGCCCATGGGTCCTACTAGTAAGTAAATGCAAACGTGATACGGACTGGGTGGTGAAAACATATAAGAAAGTACATCAATGTTTGCAAACACGGAAAGTGAAAGTGATGAAGGTATATCGAGCCAAAGAGGAAGCAAGGAAAAAAATTCAAGAAGATTATGGCGGCCAATATGCTTTGCTTAGAGATTATGCTATGGAGCTACAACAACGAAATCCGGATACTACAATTAAAATTGATGTGGAAAGCATTGAAGAAGGGTT...

CDS

Download CDS FASTA

1122 bp · TkA03G047230|TK1151|CDS

TGCCCATGGGTCCTACTAGTAAGTAAATGCAAACGTGATACGGACTGGGTGGTGAAAACATATAAGAAAGTACATCAATGTTTGCAAACACGGAAAGTGAAAGTGATGAAGGTATATCGAGCCAAAGAGGAAGCAAGGAAAAAAATTCAAGAAGATTATGGCGGCCAATATGCTTTGCTTAGAGATTATGCTATGGAGCTACAACAACGAAATCCGGATACTACAATTAAAATTGATGTGGAAAGCATTGAAGAAGGGTT...

Protein

Download Protein FASTA

373 aa · TkA03G047230|TK1151|PROTEIN

CPWVLLVSKCKRDTDWVVKTYKKVHQCLQTRKVKVMKVYRAKEEARKKIQEDYGGQYALLRDYAMELQQRNPDTTIKIDVESIEEGFVAGKRDFLGLDGTFMKCPFPGKILAAVGLDGNNCIYPVAYAVVESENLNSWTWFLTCLGDDLDLHNTGRAHCDALLNNMCKSFNSKLSKARDKPIITCLEFIREYLTNRRVTVQKEIDKASGPLTPTATEWLETIKKEAAQYRAICCGNGRYQVSALCMDQCVVDVAAGTCSC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G047230`
TK1151 ID	TkA03G047230
OH-1004 ID	LXL04_018210
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	61.300
Protein coverage (%)	TK1151 98.391 / OH-1004 56.612 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G047230`
Location	Chr03:12460876-12462735 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018210` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.876

Rank 1 · TkA03G047230 · TK1151

Cytoplasm0.141

Rank 2 · TkA03G047230 · TK1151

Extracellular0.037

Rank 3 · TkA03G047230 · TK1151

Cell membrane0.030

Rank 4 · TkA03G047230 · TK1151

Endoplasmic reticulum0.025

Rank 5 · TkA03G047230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10551MULE11-36 aa

PF10551MULE95-143 aa

PF11707Npa1141-194 aa

PF00842Ala_racemase_C231-255 aa

PF04434SWIM251-278 aa

PF28686HUA1_small341-356 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G047230	`PF10551`	MULE	11	36	7.1e-08	33.4
TkA03G047230	`PF10551`	MULE	95	143	7.1e-08	33.4
TkA03G047230	`PF11707`	Npa1	141	194	0.0068	16.4
TkA03G047230	`PF00842`	Ala_racemase_C	231	255	0.19	12.0
TkA03G047230	`PF04434`	SWIM	251	278	1.9e-09	37.6
TkA03G047230	`PF28686`	HUA1_small	341	356	2.7	8.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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