TkA03G040730 | RubberDandelionOmics

Gene overview

TkA03G040730

Reference: TK1151 Chr: Chr03 Coordinates: 10748225-10749998 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · TkA03G040730|TK1151|cDNA

ATGTGCTTGAATGAAATGAAAAAGGGGAATAAACCCGATAGTCACTTAAATAAGGCTGCCTGGTTGAACATAGAGAAAGGTATGTTGGAAAAAATCGAGAAAGTTTTTGACAAAAAACAGCTTAGTAATAAATGGGAAACCATGAAGAGAGATTGGAAGCTTTATGACCGCTTGATGAGGCTTGAAACCGGAATCGGGGGGACGAGAAGCTTGATAGATGCATCGGAAGAGTGGTGGGCGGAGAAAATAAACGCCAATAA...

CDS

Download CDS FASTA

1119 bp · TkA03G040730|TK1151|CDS

ATGTGCTTGAATGAAATGAAAAAGGGGAATAAACCCGATAGTCACTTAAATAAGGCTGCCTGGTTGAACATAGAGAAAGGTATGTTGGAAAAAATCGAGAAAGTTTTTGACAAAAAACAGCTTAGTAATAAATGGGAAACCATGAAGAGAGATTGGAAGCTTTATGACCGCTTGATGAGGCTTGAAACCGGAATCGGGGGGACGAGAAGCTTGATAGATGCATCGGAAGAGTGGTGGGCGGAGAAAATAAACGCCAATAA...

Protein

Download Protein FASTA

372 aa · TkA03G040730|TK1151|PROTEIN

MCLNEMKKGNKPDSHLNKAAWLNIEKGMLEKIEKVFDKKQLSNKWETMKRDWKLYDRLMRLETGIGGTRSLIDASEEWWAEKINANKEFAKFKDINLDIYATHYAPLFQDSVAVGDHTMNPLQFQGGENKEGKGDKDDINFHKLCGLAVRAIVIGHNLRNTRNPCHTSDDTGYKFVTNILNGNGKRCYQMFRLHVPVYRHLCKELVTNYGLTQTRNIAIEESVAIFLVCLAHGYTNRFMQELFNHSEETISRHFHKVLEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G040730`
TK1151 ID	TkA03G040730
OH-1004 ID	LXL04_038652
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	64.000
Protein coverage (%)	TK1151 99.731 / OH-1004 64.005 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G040730`
Location	Chr03:10748225-10749998 (-)
Description	Similar to LIMYB: L10-interacting MYB domain-containing protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038652` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific Molecular Function GO:0004518 nuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	ath:AT5G05800 bta:514442 rno:690164 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · TkA03G040730 · TK1151

Cytoplasm0.128

Rank 2 · TkA03G040730 · TK1151

Mitochondrion0.017

Rank 3 · TkA03G040730 · TK1151

Cell membrane0.015

Rank 4 · TkA03G040730 · TK1151

Extracellular0.014

Rank 5 · TkA03G040730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12776Myb_DNA-bind_32-81 aa

PF26138DUF8040167-263 aa

PF01609DDE_Tnp_1294-363 aa

PF13359DDE_Tnp_4301-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G040730	`PF12776`	Myb_DNA-bind_3	2	81	1.4e-09	39.5
TkA03G040730	`PF26138`	DUF8040	167	263	1.8e-35	121.4
TkA03G040730	`PF01609`	DDE_Tnp_1	294	363	0.01	16.3
TkA03G040730	`PF13359`	DDE_Tnp_4	301	357	6.3e-07	29.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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