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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G027660
Reference: TK1151 Chr: Chr03 Coordinates: 7411230-7414922 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2705 bp · TkA03G027660|TK1151|cDNA

TTCATATTATTGAATTTGAAATTCTAGTCGAAAGATGATTGCACCAAACGCTAACGACGTAGCTTTAGGAGAAGTAATGGTGGATTTACTGAATGCTGTAGTAGTACAAACTAAAAGAACCGCCAATTTTAGAACTCTACTCAAGCGACTGGAGAAAACTCTAAGGAACATCGAGCCCATATTTTATGGAATTGAGAGGTTGAGGAAGGTGTTGTACTACTATCCTGAAAACGAGACCAAATTGTTCATATTTTATGTGG...

CDS

Download CDS FASTA

1875 bp · TkA03G027660|TK1151|CDS

ATGATTGCACCAAACGCTAACGACGTAGCTTTAGGAGAAGTAATGGTGGATTTACTGAATGCTGTAGTAGTACAAACTAAAAGAACCGCCAATTTTAGAACTCTACTCAAGCGACTGGAGAAAACTCTAAGGAACATCGAGCCCATATTTTATGGAATTGAGAGGTTGAGGAAGGTGTTGTACTACTATCCTGAAAACGAGACCAAATTGTTCATATTTTATGTGGCAAATGGGAGAGAAGTAGTTCTTGAGTGCTCAAA...

Protein

Download Protein FASTA

624 aa · TkA03G027660|TK1151|PROTEIN

MIAPNANDVALGEVMVDLLNAVVVQTKRTANFRTLLKRLEKTLRNIEPIFYGIERLRKVLYYYPENETKLFIFYVANGREVVLECSNIKCWNVYKKFLHANKLIALDNMLLRFFQTENMSLNRRSLFEIYALGDKMDQVLTAVTKQTSGLVSDSCSVPGMPDVIIGLDSHLQNLKQMLLKDDTHVLTVSAPGGCGKTTLVKMICHDNEIKDIFGDNILYVTVSKTTSLKTIIQKLFSHFHVNACELQTDEEAKNQLENMF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G027660
TK1151 IDTkA03G027660
OH-1004 IDLXL04_006345
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)95.400
Protein coverage (%)TK1151 97.436 / OH-1004 62.423
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G027660
LocationChr03:7411230-7414922 (-)
DescriptionSimilar to At5g66900: Probable disease resistance protein At5g66900
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66900 Probable disease resistance protein. No verified direct reference in this release
At5g66910 Probable disease resistance protein. No verified direct reference in this release
At4g33300 Probable disease resistance protein. No verified direct reference in this release
At1g33560 Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner.
Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens.2003 · DOI: 10.1094/mpmi.2003.16.8.669
At5g04720 Probable disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006345 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0051707 response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0048046 apoplast Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G33560
ath:AT4G33300
ath:AT5G04720
ath:AT5G66900
ath:AT5G66910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.430
Rank 1 · TkA03G027660 · TK1151
Cytoplasm0.314
Rank 2 · TkA03G027660 · TK1151
Nucleus0.150
Rank 3 · TkA03G027660 · TK1151
Endoplasmic reticulum0.117
Rank 4 · TkA03G027660 · TK1151
Extracellular0.079
Rank 5 · TkA03G027660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05659RPW810-117 aa
PF13401AAA_2212-45 aa
PF05298Bombinin19-51 aa
PF05621TniB27-54 aa
PF00931NB-ARC169-332 aa
PF05621TniB169-275 aa
PF01637ATPase_2170-275 aa
PF13191AAA_16170-275 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G027660PF05659RPW8101171.8e-2176.9
TkA03G027660PF13401AAA_2212459.9e-0936.3
TkA03G027660PF05298Bombinin19510.1112.9
TkA03G027660PF05621TniB27540.003817.4
TkA03G027660PF00931NB-ARC1693322.3e-2486.6
TkA03G027660PF05621TniB1692750.003817.4
TkA03G027660PF01637ATPase_21702750.000321.4
TkA03G027660PF13191AAA_161702750.02316.0
TkA03G027660PF03215Rad171732330.002818.3
TkA03G027660PF25201nSTAND61732510.04614.5
TkA03G027660PF02367TsaE1732160.1412.8
TkA03G027660PF20720nSTAND31752100.00318.0
TkA03G027660PF24883NPHP3_N1762610.0002422.1
TkA03G027660PF25199nSTAND_NTPase51802060.002418.4
TkA03G027660PF13245AAA_191832240.07713.9
TkA03G027660PF13401AAA_221842759.9e-0936.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKZ1Arabidopsis thalianasp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g6690037.900%Swiss-ProtMedium
Q9FKZ0Arabidopsis thalianasp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g6691036.000%Swiss-ProtMedium
Q9SZA7Arabidopsis thalianasp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g3330029.800%Swiss-ProtLow
Q9FW44Arabidopsis thalianasp|Q9FW44|ADR1_ARATH Disease resistance protein ADR128.500%Swiss-ProtLow
Q9LZ25Arabidopsis thalianasp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g0472028.300%Swiss-ProtLow

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