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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G013130
Reference: TK1151 Chr: Chr03 Coordinates: 3404931-3409060 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2305 bp · TkA03G013130|TK1151|cDNA

GCCAGCTGGCGTTGCAGGCGCTAATGTGGACGCAAAAGTGGATTTATCATTTATATATAACTCACTCATCACAATAATCCTCTCTAATAAAAGAGGATTATTACCCACCAATGTGGCACACCCACAAACCAGAATGCCACGTGTCATTTTTTGAGCCATTTCCATTTAATCCTTCTTCCTTCCTTGTGTGTAACTCCTTGTGTGTAACTGATCTGTTAATGGCTTAAATCGTCTATTGCTTGAAACCAGGGAGCATTATT...

CDS

Download CDS FASTA

993 bp · TkA03G013130|TK1151|CDS

ATGGTCGCCTTAGAAGAAGAGGAAGAAGGTGAATGTTCAAGTCATGAACAGGAAGCCATTGATGAAGCTTTTGCTAGATCTTTGCAGGAATTAGGGGAAGAATTTGATGATATTTACATATCTGAACACAGTGGGACCCAAAGTTCAAGAACAACTCCTTCTTCAAGGTCACAGGGTGCAAATTCGAATTCAATGCACGATTCCATTGATCCTGATGGTATGGAATATGAGGAATTACTACATTTAGTGGAAGCCATAGG...

Protein

Download Protein FASTA

330 aa · TkA03G013130|TK1151|PROTEIN

MVALEEEEEGECSSHEQEAIDEAFARSLQELGEEFDDIYISEHSGTQSSRTTPSSRSQGANSNSMHDSIDPDGMEYEELLHLVEAIGVENRGISESRISQLPTSKMMQVFSSRGFRWNCCLDITLHRFIANSPWFKHGKNLNCWGYFRKTTFAWGYWDLKLLSFFSKWLQDFRLLIRFEGLLQDQFILNCQGYFRNLWIWQIVFYFGTMQQVMEFLNRLYRGFLWDYAVDRGWDWVYRLMLLEFISNRLMQFLWRWYKME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G013130
TK1151 IDTkA03G013130
OH-1004 IDLXL04_004336
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)63.000
Protein coverage (%)TK1151 96.061 / OH-1004 84.444
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G013130
LocationChr03:3404931-3409060 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004336 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0046621 negative regulation of organ growth Biological Process
GO:0048437 floral organ development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:1900057 positive regulation of leaf senescence Biological Process
GO:0005634 nucleus Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0031624 ubiquitin conjugating enzyme binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT3G63530
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.375
Rank 1 · TkA03G013130 · TK1151
Nucleus0.321
Rank 2 · TkA03G013130 · TK1151
Mitochondrion0.185
Rank 3 · TkA03G013130 · TK1151
Endoplasmic reticulum0.136
Rank 4 · TkA03G013130 · TK1151
Cell membrane0.100
Rank 5 · TkA03G013130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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