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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G010570
Reference: TK1151 Chr: Chr03 Coordinates: 2673962-2676163 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1422 bp · TkA03G010570|TK1151|cDNA

ATGCACGAACCAAACGACTATGCTTTCAATGTCATGATTCGTGGCCTAGCGACAGCGTGGCAGAGGTTTGATCTTACTTTCGAACTGTATTACAGGATGAAGGGCTTAGGCATAAAGCCCAATAATTTCACGTACCCGTTTTTCTTCATCGCGTGTTCAAATCTTTTGGCGCTTGAACACGGTAAAGTAGCTCATTCTCTAGCGTTGAGAAGTGGATTAATGGTGGATTGTCATGTGAGGCATTCATTGATTACCATGTA...

CDS

Download CDS FASTA

1422 bp · TkA03G010570|TK1151|CDS

ATGCACGAACCAAACGACTATGCTTTCAATGTCATGATTCGTGGCCTAGCGACAGCGTGGCAGAGGTTTGATCTTACTTTCGAACTGTATTACAGGATGAAGGGCTTAGGCATAAAGCCCAATAATTTCACGTACCCGTTTTTCTTCATCGCGTGTTCAAATCTTTTGGCGCTTGAACACGGTAAAGTAGCTCATTCTCTAGCGTTGAGAAGTGGATTAATGGTGGATTGTCATGTGAGGCATTCATTGATTACCATGTA...

Protein

Download Protein FASTA

473 aa · TkA03G010570|TK1151|PROTEIN

MHEPNDYAFNVMIRGLATAWQRFDLTFELYYRMKGLGIKPNNFTYPFFFIACSNLLALEHGKVAHSLALRSGLMVDCHVRHSLITMYSMCSALGCARKVFDEILERDLVSWNSMISGYSKMGVPKGALELFEMMTKKDLVTWNAMITGYAQSGFSHEAISLFNTMKDEGINPNNITLSGVLSACASLGALEIGKSIEKYAFQKGLLHDIYVATSLIDMYAKCGNVENASKVFDEMPLKNIVTWNAMISCYAFNGRAKEAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G010570
TK1151 IDTkA03G010570
OH-1004 IDLXL04_006132
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)77.000
Protein coverage (%)TK1151 99.366 / OH-1004 83.721
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G010570
LocationChr03:2673962-2676163 (-)
DescriptionSimilar to PCMP-E23: Pentatricopeptide repeat-containing protein At2g34400
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g34400 Pentatricopeptide repeat-containing protein At2g34400. No verified direct reference in this release
At5g08510 Pentatricopeptide repeat-containing protein At5g08510. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release
At2g02980 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006132 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT2G22410
ath:AT2G29760
ath:AT2G34400
ath:AT3G12770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.631
Rank 1 · TkA03G010570 · TK1151
Plastid0.183
Rank 2 · TkA03G010570 · TK1151
Nucleus0.060
Rank 3 · TkA03G010570 · TK1151
Cytoplasm0.029
Rank 4 · TkA03G010570 · TK1151
Peroxisome0.006
Rank 5 · TkA03G010570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12854PPR_12-16 aa
PF22330Rib_mS39_PPR2-17 aa
PF17177PPR_long3-75 aa
PF13041PPR_24-52 aa
PF13812PPR_34-52 aa
PF01535PPR8-37 aa
PF12854PPR_137-45 aa
PF00452Bcl-259-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G010570PF12854PPR_12162.5e-40136.6
TkA03G010570PF22330Rib_mS39_PPR2170.2711.7
TkA03G010570PF17177PPR_long3751.3e-0731.9
TkA03G010570PF13041PPR_24523.8e-54181.3
TkA03G010570PF13812PPR_34526.2e-2484.6
TkA03G010570PF01535PPR8378.8e-53173.7
TkA03G010570PF12854PPR_137452.5e-40136.6
TkA03G010570PF00452Bcl-259800.212.9
TkA03G010570PF01535PPR821078.8e-53173.7
TkA03G010570PF13041PPR_2831063.8e-54181.3
TkA03G010570PF00452Bcl-2911160.212.9
TkA03G010570PF22330Rib_mS39_PPR941200.2711.7
TkA03G010570PF12854PPR_1951022.5e-40136.6
TkA03G010570PF13428TPR_14951060.0001822.6
TkA03G010570PF12854PPR_11041352.5e-40136.6
TkA03G010570PF13812PPR_31041376.2e-2484.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64705Arabidopsis thalianasp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g3440042.500%Swiss-ProtMedium
Q9FNN7Arabidopsis thalianasp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g0851049.800%Swiss-ProtMedium
Q9FI80Arabidopsis thalianasp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g4891041.000%Swiss-ProtMedium
Q8LK93Arabidopsis thalianasp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980, chloroplastic35.300%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631038.300%Swiss-ProtMedium

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