TkA03G010390 | RubberDandelionOmics

Gene overview

TkA03G010390

Reference: TK1151 Chr: Chr03 Coordinates: 2615823-2620337 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1582 bp · TkA03G010390|TK1151|cDNA

TCGGCGGTGTGGTCCATATATCAAAATGGCTAAAAATAACATTGATGATGAGTATCCCAGTTTCCAAGCAAAAATTCATAGACGAGTTAGTGAGGTGTACACCTTCTGTCGGTTTTACAATTCTACTTCAATGATAGGCATTAGGCAGTTGAGTAACAGAAAACAATTCGAGCAGTAATGGCGCTTCCGATACCGATTCCTTGCACTTCTTCAGTTTTCCACCGCCATAGCATTTGCAGGAAAGCATCATCGCCTCAAAT...

CDS

Download CDS FASTA

1338 bp · TkA03G010390|TK1151|CDS

ATGGCGCTTCCGATACCGATTCCTTGCACTTCTTCAGTTTTCCACCGCCATAGCATTTGCAGGAAAGCATCATCGCCTCAAATCCCTCGCCAATCTCATTTATTATGGAAGAATTTCGAATTTTCAGCTTCAAATACTCGGTTTTCTTGCTCGAAGGTTCCGTGCAGTTCTTCAGTTTTCCACCGCCATAGCATATGCCGGAAAGCATCTCCGACTCAGATCCGTCGCAAACTTCATCCATTATGGAAGAATTTCGATTT...

Protein

Download Protein FASTA

445 aa · TkA03G010390|TK1151|PROTEIN

MALPIPIPCTSSVFHRHSICRKASSPQIPRQSHLLWKNFEFSASNTRFSCSKVPCSSSVFHRHSICRKASPTQIRRKLHPLWKNFDFFASNTRFSCSKSDLQLHVSSSNEFIENLMDCVDLSEKEAQASLEFLLRDGSEALISAFLVLLRAKGETFEEIVGLAKAMINNGRKVEGIKDAVDIVGTGGDGHNTVNISTGAALLVAACGAKVAKQGNRSSSSACGSADVLEELGVDINLEPEGVKRCLEEVGIGFMMSPNYH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G010390`
TK1151 ID	TkA03G010390
OH-1004 ID	LXL04_006119
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G010390

Location Chr03:2615823-2620337 (-)

Description Similar to PAT1: Anthranilate phosphoribosyltransferase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g17990`	Anthranilate phosphoribosyltransferase, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006119 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000162 L-tryptophan biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004048 anthranilate phosphoribosyltransferase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT5G17990

cca:CCA_00563

cfe:CF0439

deh:cbdbA1444

msi:Msm_1144

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.948

Rank 1 · TkA03G010390 · TK1151

Mitochondrion0.086

Rank 2 · TkA03G010390 · TK1151

Cytoplasm0.027

Rank 3 · TkA03G010390 · TK1151

Nucleus0.019

Rank 4 · TkA03G010390 · TK1151

Peroxisome0.013

Rank 5 · TkA03G010390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02885Glycos_trans_3N110-170 aa

PF00591Glycos_transf_3142-170 aa

PF00591Glycos_transf_3177-427 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G010390	`PF02885`	Glycos_trans_3N	110	170	2.2e-13	50.5
TkA03G010390	`PF00591`	Glycos_transf_3	142	170	7.4e-98	328.0
TkA03G010390	`PF00591`	Glycos_transf_3	177	427	7.4e-98	328.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q02166`	Arabidopsis thaliana	sp\|Q02166\|TRPD_ARATH Anthranilate phosphoribosyltransferase, chloroplastic	75.400%	Swiss-Prot	High

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