TkA03G003270 | RubberDandelionOmics

Gene overview

TkA03G003270

Reference: TK1151 Chr: Chr03 Coordinates: 792696-795562 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2482 bp · TkA03G003270|TK1151|cDNA

AAAAAATTGCTTTACGTTATTCCATTCATTTCATTTCTCCATAGTTTTGTCCGATTTGAAGACCTTGATAGGGATTTAGCTGATTCCGCCACGTTATGGAATCTCTGACCTCGAAAGTGTAGCCGTGAGTTATGGCGTGTGGATTTCCATCCACTCTCATCTCTGTCAAACAATTTCTTGGGAGTCTCCCTACTAACTGATAATTTAGAATATTCACATCCGTCCTGTTTGTTTATCGGCTTCACCAATCCTACCTCTCT...

CDS

Download CDS FASTA

2022 bp · TkA03G003270|TK1151|CDS

ATGGGGAAGGAATCCACGACACCGATACTCGATATATCGGAACCATTGCTCCACGATTCCAATCATTCTACTCCAGAAACCATACCAGAATGGAAAGATCAGATCACTTTGAGGGGATTAATCGTCAGTGCTCTGCTGGGGACGCTATTTTGTATCATCACCCACAAGCTCAATCTCACCGTCGGAATCATCCCTTCCTTAAACGTCGCTGCCGGATTGCTCGGTTTTTTCTTCGTCAAATCATGGACTACTTTCCTAGA...

Protein

Download Protein FASTA

673 aa · TkA03G003270|TK1151|PROTEIN

MGKESTTPILDISEPLLHDSNHSTPETIPEWKDQITLRGLIVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTTFLEKFGFSVRPFTKQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMTGFLFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTSGADLAGKQVSCLGKYLSISFVWSCFKWFFSGIGDSCGFDNFPSLGLTLFKNTFYFDFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G003270`
TK1151 ID	TkA03G003270
OH-1004 ID	LXL04_006037
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G003270

Location Chr03:792696-795562 (-)

Description Similar to YSL6: Probable metal-nicotianamine transporter YSL6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27020`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release
`At5g41000`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0390500`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release
`Os04g0390600`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release
`Os04g0524600`	May be involved in the transport of nicotianamine-chelated metals.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006037 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0034755 iron ion transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009526 plastid envelope Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0035673 oligopeptide transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G27020

ath:AT5G41000

dosa:Os04g0390500

dosa:Os04g0390600

dosa:Os04g0524600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.401

Rank 1 · TkA03G003270 · TK1151

Cell membrane0.320

Rank 2 · TkA03G003270 · TK1151

Endoplasmic reticulum0.166

Rank 3 · TkA03G003270 · TK1151

Golgi apparatus0.076

Rank 4 · TkA03G003270 · TK1151

Cytoplasm0.074

Rank 5 · TkA03G003270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03169OPT34-654 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G003270	`PF03169`	OPT	34	654	1.5e-147	493.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6R3K6`	Arabidopsis thaliana	sp\|Q6R3K6\|YSL6_ARATH Probable metal-nicotianamine transporter YSL6	81.100%	Swiss-Prot	High
`Q6R3K8`	Arabidopsis thaliana	sp\|Q6R3K8\|YSL4_ARATH Probable metal-nicotianamine transporter YSL4	77.200%	Swiss-Prot	High
`Q7XRV2`	Oryza sativa subsp. japonica	sp\|Q7XRV2\|YSL6_ORYSJ Probable metal-nicotianamine transporter YSL6	76.900%	Swiss-Prot	High
`Q7XRV1`	Oryza sativa subsp. japonica	sp\|Q7XRV1\|YSL5_ORYSJ Probable metal-nicotianamine transporter YSL5	63.100%	Swiss-Prot	High
`Q5JQD7`	Oryza sativa subsp. japonica	sp\|Q5JQD7\|YSL12_ORYSJ Probable metal-nicotianamine transporter YSL12	61.600%	Swiss-Prot	High

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